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Greengenes [87] is a full-length 16S rRNA gene database that provides chimera screening, standard alignment and a curated taxonomy based on de novo tree inference. [88] [89] Overview: 1,012,863 RNA sequences from 92,684 organisms contributed to RNAcentral. The shortest sequence has 1,253 nucleotides, the longest 2,368.
The databases in the table below are selected from the databases listed in the Nucleic Acids Research (NAR) databases issues and database collection and the databases cross-referenced in the UniProtKB. Most of these databases are cross-referenced with UniProt / UniProtKB so that identifiers can be mapped to each other. [15] Proteins in human:
Database of long-noncoding RNAs causally implicated in cancer through in vivo, in vitro and other evidence. [15] BIGTranscriptome: High-confidence of coding and noncoding transcriptomes assembled with hundreds of pseudo-stranded and stranded RNA-seq datasets. [16] lncRNAKB
The NCBI houses a series of databases relevant to biotechnology and biomedicine and is an important resource for bioinformatics tools and services. Major databases include GenBank for DNA sequences and PubMed, a bibliographic database for biomedical literature. Other databases include the NCBI Epigenomics database.
The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences. [1] It involves the following computerized databases : NIG 's DNA Data Bank of Japan ( Japan ), NCBI 's GenBank ( USA ) and the EMBL - EBI 's European Nucleotide Archive ( EMBL ).
This RNA modification databases are a compilation of databases and web portals and servers used for RNA modification. RNA modification occurs in all living organisms, and is one of the most evolutionarily conserved properties of RNAs. [1] [2] [3] More than 100 different types of RNA modifications have been characterized across all living ...
KEGG (Kyoto Encyclopedia of Genes and Genomes) is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances.KEGG is utilized for bioinformatics research and education, including data analysis in genomics, metagenomics, metabolomics and other omics studies, modeling and simulation in systems biology, and translational research in drug development.
The Death Domain database is a secondary database of protein-protein interactions (PPI) of the death domain superfamily. [1] Members of this superfamily are key players in apoptosis , inflammation , necrosis , and immune cell signaling pathways.
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