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DNA gyrase, or simply gyrase, is an enzyme within the class of topoisomerase and is a subclass of Type II topoisomerases [1] that reduces topological strain in an ATP dependent manner while double-stranded DNA is being unwound by elongating RNA-polymerase [2] or by helicase in front of the progressing replication fork.
Divisome and elongasome complexes responsible for peptidoglycan synthesis during lateral cell-wall growth and division. [1]The divisome is a protein complex in bacteria that is responsible for cell division, constriction of inner and outer membranes during division, and peptidoglycan (PG) synthesis at the division site.
Others span cell membranes and are commonly found in porins. Porin-like barrel structures are encoded by as many as 2–3% of the genes in Gram-negative bacteria. [1] It has been shown that more than 600 proteins with various function such as oxidase, dismutase, and amylase contain the beta barrel structure. [2]
With DNA in its "relaxed" state, a strand usually circles the axis of the double helix once every 10.4 base pairs, but if the DNA is twisted the strands become more tightly or more loosely wound. [43] If the DNA is twisted in the direction of the helix, this is positive supercoiling, and the bases are held more tightly together.
HU is a small (10 kDa [12]) bacterial DNA-binding protein, which structurally differs from a eukaryotic histone but functionally acts similarly to a histone by inducing negative supercoiling into circular DNA with the assistance of topoisomerase. The protein has been implicated in DNA replication, recombination, and repair.
Negative supercoils favor local unwinding of the DNA, allowing processes such as transcription, DNA replication, and recombination. Negative supercoiling is also thought to favour the transition between B-DNA and Z-DNA , and moderate the interactions of DNA binding proteins involved in gene regulation .
Chromatin is a complex of DNA and protein found in eukaryotic cells. [1] The primary function is to package long DNA molecules into more compact, denser structures. This prevents the strands from becoming tangled and also plays important roles in reinforcing the DNA during cell division , preventing DNA damage , and regulating gene expression ...
The isolated nucleoid contains 80% DNA, 10% protein, and 10% RNA by weight. [7] [8] The gram-negative bacterium Escherichia coli is a model system for nucleoid research into how chromosomal DNA becomes the nucleoid, the factors involved therein, what is known about its structure, and how some of the DNA structural aspects influence gene expression.