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Early de novo sequence assemblers, such as SEQAID [2] (1984) and CAP [3] (1992), used greedy algorithms, such as overlap-layout-consensus (OLC) algorithms. These algorithms find overlap between all reads, use the overlap to determine a layout (or tiling) of the reads, and then produce a consensus sequence.
mesh adaptive-refinement: Yes, full adaptive mesh refinement (h-refinement); no p-refinement but several higher-order elements are included. Mesh adaptation on the whole or parts of the geometry, for stationary, eigenvalue, and time-dependent simulations and by rebuilding the entire mesh or refining chosen mesh elements.
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A toolkit is an assembly of tools; set of basic building units for user interfaces. The word toolkit may refer to: Abstract Window Toolkit; Accessibility Toolkit; Adventure Game Toolkit; B-Toolkit; Cheminformatics toolkits; Dojo Toolkit; Fox toolkit; GTK, the GIMP Toolkit; Google Web Toolkit (GWT) Harmony (toolkit), an incomplete set of ...
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Gmsh is a finite-element mesh generator developed by Christophe Geuzaine and Jean-François Remacle. Released under the GNU General Public License, Gmsh is free software.. Gmsh contains 4 modules: for geometry description, meshing, solving and post-processing.
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