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The 1000 Plant Transcriptomes Initiative (1KP) was an international research effort to establish the most detailed catalogue of genetic variation in plants. It was announced in 2008 and headed by Gane Ka-Shu Wong and Michael Deyholos of the University of Alberta .
The TIGR Plant Transcript Assemblies database in computational biology is a repository of sequences collected for the construction of transcript assemblies. [1]
Transcriptome analysis have been used to study the evolution and diversification process of plant species. In 2014, the 1000 Plant Genomes Project was completed in which the transcriptomes of 1,124 plant species from the families viridiplantae, glaucophyta and rhodophyta were sequenced.
Early diverging land plant: Ceratodon purpureus: Bryophytes: Early diverging land plant: Fontinalis antipyretica (greater water-moss) Bryophytes: Aquatic moss 385.2 Mbp 16,538 BGI: 2020 [1] BGISEQ-500 & 10X, scaffold N50 45.8 Kbp Marchantia polymorpha: Bryophytes: Early diverging land plant 225.8 Mb 19,138 2017 [2] Physcomitrella patens ssp ...
Contains manual curations of public transcriptome datasets, focusing on medical and plant biology data. Individual experiments are normalised across the full database to allow comparison of gene expression across diverse experiments. Full functionality requires licence purchase, with free access to a limited functionality. RefEx [172] DDBJ: All
PopGenIE (Populus Genome Integrative Explorer) is an integrated set of tools for exploring the genome and transcriptome of the model plant system Populus. PopGenie is a model organism database which brings together the increasingly extensive collection of genetics and genomics data created by the scientific community in a central resource. Such ...
Avibase – the World Bird Database [4] Birds, distribution, taxonomy X Avibase is an extensive database information system about all birds of the world, containing over 27 million records about 10,000 species and 22,000 subspecies of birds, including distribution information for 20,000 regions, taxonomy, synonyms in several languages and more
Plant Genome DataBase Japan [18] (PGDBj) is a website that contains information related to genomes of model and crop plants from databases. It has three main components: ortholog db, DNA marker and linkage map db, and plant resource db, where multiple plant resources accumulated by different institutes are integrated.