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  2. Molecular graph - Wikipedia

    en.wikipedia.org/wiki/Molecular_graph

    Methyl groups are implied, but not visualized. In chemical graph theory and in mathematical chemistry, a molecular graph or chemical graph is a representation of the structural formula of a chemical compound in terms of graph theory. A chemical graph is a labeled graph whose vertices correspond to the atoms of the compound and edges correspond ...

  3. Molecule - Wikipedia

    en.wikipedia.org/wiki/Molecule

    A molecule is a group of two or more atoms held together by attractive forces known as chemical bonds; depending on context, the term may or may not include ions which satisfy this criterion. [4][5][6][7][8] In quantum physics, organic chemistry, and biochemistry, the distinction from ions is dropped and molecule is often used when referring to ...

  4. Chemical structure - Wikipedia

    en.wikipedia.org/wiki/Chemical_structure

    Chemical structure. A chemical structure of a molecule is a spatial arrangement of its atoms and their chemical bonds. Its determination includes a chemist 's specifying the molecular geometry and, when feasible and necessary, the electronic structure of the target molecule or other solid. Molecular geometry refers to the spatial arrangement of ...

  5. Molecular descriptor - Wikipedia

    en.wikipedia.org/wiki/Molecular_descriptor

    The invariance properties of molecular descriptors can be defined as the ability of the algorithm for their calculation to give a descriptor value that is independent of the particular characteristics of the molecular representation, such as atom numbering or labeling, spatial reference frame, molecular conformations, etc. Invariance to molecular numbering or labeling is assumed as a minimal ...

  6. Simplified Molecular Input Line Entry System - Wikipedia

    en.wikipedia.org/wiki/Simplified_Molecular_Input...

    The Simplified Molecular Input Line Entry System (SMILES) is a specification in the form of a line notation for describing the structure of chemical species using short ASCII strings. SMILES strings can be imported by most molecule editors for conversion back into two-dimensional drawings or three-dimensional models of the molecules.

  7. Chemical graph theory - Wikipedia

    en.wikipedia.org/wiki/Chemical_graph_theory

    Chemical graph theory is the topology branch of mathematical chemistry which applies graph theory to mathematical modelling of chemical phenomena. [1] The pioneers of chemical graph theory are Alexandru Balaban, Ante Graovac, Iván Gutman, Haruo Hosoya, Milan Randić and Nenad Trinajstić [2] (also Harry Wiener and others). In 1988, it was ...

  8. Molecular graphics - Wikipedia

    en.wikipedia.org/wiki/Molecular_graphics

    Molecular graphics is the discipline and philosophy of studying molecules and their properties through graphical representation. [1] IUPAC limits the definition to representations on a "graphical display device". [ 2 ]

  9. Wiener index - Wikipedia

    en.wikipedia.org/wiki/Wiener_index

    Wiener index. In chemical graph theory, the Wiener index (also Wiener number) introduced by Harry Wiener, is a topological index of a molecule, defined as the sum of the lengths of the shortest paths between all pairs of vertices in the chemical graph representing the non- hydrogen atoms in the molecule. [1]