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It measures the diversity of self-avoiding walks which start from a given node. A walk on a network is a sequence of adjacent vertices; a self-avoiding walk visits (lists) each vertex at most once. The original work used simulated walks of length 60 to characterize the network of urban streets in a Brazilian city. [6]
In general, a distance matrix is a weighted adjacency matrix of some graph. In a network, a directed graph with weights assigned to the arcs, the distance between two nodes of the network can be defined as the minimum of the sums of the weights on the shortest paths joining the two nodes (where the number of steps in the path is bounded). [2]
In graph theory and theoretical computer science, the level ancestor problem is the problem of preprocessing a given rooted tree T into a data structure that can determine the ancestor of a given node at a given distance from the root of the tree. More precisely, let T be a rooted tree with n nodes, and let v be an arbitrary node of T.
Find the path of minimum total length between two given nodes P and Q. We use the fact that, if R is a node on the minimal path from P to Q, knowledge of the latter implies the knowledge of the minimal path from P to R. is a paraphrasing of Bellman's Principle of Optimality in the context of the shortest path problem.
In graph theory and theoretical computer science, the longest path problem is the problem of finding a simple path of maximum length in a given graph.A path is called simple if it does not have any repeated vertices; the length of a path may either be measured by its number of edges, or (in weighted graphs) by the sum of the weights of its edges.
By assigning the sequence to the internal nodes of the evolutionary tree, we calculate the total score of each edge, and the sum of all edges' scores is the score of the evolutionary tree. The aim of tree alignment is to find an assigned sequence, which can obtain a maximum score, and get the final matching result from the evolutionary tree and ...
The number next to each node is the distance from that node to the square red node as measured by the length of the shortest path. The green edges illustrate one of the two shortest paths between the red square node and the red circle node. The closeness of the red square node is therefore 5/(1+1+1+2+2) = 5/7.
Tree: The full input Newick Format for a single tree Subtree: an internal node (and its descendants) or a leaf node Leaf: a node with no descendants Internal: a node and its one or more descendants BranchSet: a set of one or more Branches Branch: a tree edge and its descendant subtree. Name: the name of a node Length: the length of a tree edge.