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TM-score between two protein structures (e.g., a template structure and a target structure) is defined by = [+ (())] where is the length of the amino acid sequence of the target protein, and is the number of residues that appear in both the template and target structures.
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The term template, when used in the context of word processing software, refers to a sample document that has already some details in place; those can (that is added/completed, removed or changed, differently from a fill-in-the-blank of the approach as in a form) either by hand or through an automated iterative process, such as with a software assistant.
This template employs intricate features of template syntax. You are encouraged to familiarise yourself with its setup and parser functions before editing the template. If your edit causes unexpected problems, please undo it quickly, as this template may appear on a large number of pages.
Spaces within a formula must be directly managed (for example by including explicit hair or thin spaces). Variable names must be italicized explicitly, and superscripts and subscripts must use an explicit tag or template. Except for short formulas, the source of a formula typically has more markup overhead and can be difficult to read.
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This parser function can be used to detect whether a template parameter is defined, even if it has been set to a false value. For example, to check whether the first positional parameter has been passed to a template (note that the strings "+" and "-" can be any two different non-whitespace strings):