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Transcriptomics technologies are the techniques used to study an organism's transcriptome, the sum of all of its RNA transcripts. The information content of an organism is recorded in the DNA of its genome and expressed through transcription .
Transcriptomics is an emerging and continually growing field in biomarker discovery for use in assessing the safety of drugs or chemical risk assessment. [ 33 ] Transcriptomes may also be used to infer phylogenetic relationships among individuals or to detect evolutionary patterns of transcriptome conservation.
ADT data analysis [2] [7] [10] [11] (based on the developer's guidelines): CITE-seq-Count is a Python package from CITE-Seq developers that can be used to obtain raw counts. Seurat package from Satija lab further allows combining of the protein and RNA counts and performing clustering on both measurements, as well as doing differential ...
In single-cell analysis input list of genes of interest can be selected based on differentially expressed genes or groups of genes generated from biclustering. The number of genes annotated to a GO term in the input list is normalised against the number of genes annotated to a GO term in the background set of all genes in genome to determine ...
eXpress performance includes transcript-level RNA-Seq quantification, allele-specific and haplotype analysis and can estimate transcript abundances of the multiple isoforms present in a gene. Although could be coupled directly with aligners (like Bowtie), eXpress can also be used with de novo assemblers and thus is not needed a reference genome ...
Diagram illustrating genomics. The branches of science known informally as omics are various disciplines in biology whose names end in the suffix -omics, such as genomics, proteomics, metabolomics, metagenomics, phenomics and transcriptomics. Omics aims at the collective characterization and quantification of pools of biological molecules that ...
Galaxy was originally written for biological data analysis, particularly genomics. The set of available tools has been greatly expanded over the years and Galaxy is now also used for gene expression , genome assembly , proteomics , epigenomics , transcriptomics and host of other disciplines in the life sciences.
The aim of genomics is to study the genome, or the collection of genetic material in an organism. Genomics subfields, or other -omics, such as Transcriptomics and proteomics aim to characterize genome function by quantifying products of the genome (such as RNA and proteins) under different conditions.