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Protein skimming removes certain organic compounds, including proteins and amino acids found in food particles and fish waste, by using the polarity of the protein itself. . Due to their intrinsic charge, water-borne proteins are either repelled or attracted by the air–water interface and these molecules can be described as hydrophobic (such as fats or oils) or hydrophilic (such as salt ...
Software to align DNA, RNA, protein, or DNA + protein sequences via pairwise and multiple sequence alignment algorithms including MUSCLE, Mauve, MAFFT, Clustal Omega, Jotun Hein, Wilbur-Lipman, Martinez Needleman-Wunsch, Lipman-Pearson and Dotplot analysis. Both: Both: DNASTAR: 1993-2016 MUMmer suffix tree based: Nucleotide: Global: S. Kurtz et ...
A helical wheel is a type of plot or visual representation used to illustrate the properties of alpha helices in proteins. The sequence of amino acids that make up a helical region of the protein's secondary structure are plotted in a rotating manner where the angle of rotation between consecutive amino acids is 100°, so that the final ...
A coiled coil is a structural motif in proteins in which 2–7 [1] alpha-helices are coiled together like the strands of a rope. (Dimers and trimers are the most common types.) They have been found in roughly 5-10% of proteins and have a variety of functions. [2] They are one of the most widespread motifs found in protein-protein interactions.
For example, in 2013, a Fast Optimal Global Sequence Alignment Algorithm (FOGSAA), [9] suggested alignment of nucleotide/protein sequences faster than other optimal global alignment methods, including the Needleman–Wunsch algorithm. The paper claims that when compared to the Needleman–Wunsch algorithm, FOGSAA achieves a time gain of 70–90 ...
The transporter moves hydrogen phosphate (HPO 4 2−) into the cell along with 3 sodium ions. Alternatively it can move dihydrogen phosphate (H 2 PO 4 − along with 2 sodium ions. For both movements the net charge is +1. Once inside the cell hydrogen phosphate and dihydrogen phosphate may react with water to form each other.