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  2. List of protein subcellular localization prediction tools

    en.wikipedia.org/wiki/List_of_protein_sub...

    This list of protein subcellular localisation prediction tools includes software, databases, and web services that are used for protein subcellular localization prediction. Some tools are included that are commonly used to infer location through predicted structural properties, such as signal peptide or transmembrane helices , and these tools ...

  3. OCRopus - Wikipedia

    en.wikipedia.org/wiki/OCRopus

    From 2013 onwards, an additional recognition with recurrent neural networks was offered, which with the release of version 1.0 in November 2014 is the only recognizer. [14] [15] The source code is managed over GitHub and is maintained and developed by a developer community. [16] The current version of OCRopus is 1.3.3 (December 2017). [17]

  4. List of protein structure prediction software - Wikipedia

    en.wikipedia.org/wiki/List_of_protein_structure...

    Constituent amino-acids can be analyzed to predict secondary, tertiary and quaternary protein structure. This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading, ab initio methods, secondary structure prediction, and transmembrane helix and signal peptide prediction.

  5. List of PDF software - Wikipedia

    en.wikipedia.org/wiki/List_of_PDF_software

    A PDF creator and virtual PDF printer for Microsoft Windows PDF-XChange: Proprietary: Yes: PDF Tools allows creation of PDFs from many types of source input (images, scans, etc.). The PDF-XChange print driver allows printing directly to a PDF. A "lite" version of the print driver is free for non-commercial (home and academic) use. PrimoPDF ...

  6. List of gene prediction software - Wikipedia

    en.wikipedia.org/wiki/List_of_gene_prediction...

    Homology-based gene prediction based on amino acid and intron position conservation as well as RNA-Seq data [14] [15] GENIUS II Links ORFs in complete genomes to protein 3D structures: Prokaryotes, Eukaryotes [16] geneid: Program to predict genes, exons, splice sites, and other signals along DNA sequences: Eukaryotes [17] GeneParser

  7. Comparison of software for molecular mechanics modeling

    en.wikipedia.org/wiki/Comparison_of_software_for...

    High performance GPU-accelerated ab initio molecular dynamics and TD/DFT software package for very large molecular or even nanoscale systems. Runs on NVIDIA GPUs and 64-bit Linux, has heavily optimized CUDA code. Proprietary, trial licenses available PetaChem LLC: TINKER: I Yes Yes Yes Yes I I Yes Yes Software tools for molecular design-Tinker ...

  8. Octopus (software) - Wikipedia

    en.wikipedia.org/wiki/Octopus_(software)

    Octopus is a software package for performing Kohn‍–‍Sham density functional theory (DFT) and time-dependent density functional theory (TDDFT) calculations. [ 1 ] Octopus employs pseudopotentials and real-space numerical grids to propagate the Kohn‍–‍Sham orbitals in real time under the influence of time-varying electromagnetic fields.

  9. List of disorder prediction software - Wikipedia

    en.wikipedia.org/wiki/List_of_disorder...

    Computational methods exploit the sequence signatures of disorder to predict whether a protein is disordered, given its amino acid sequence. The table below, which was originally adapted from [1] and has been recently updated, shows the main features of software for disorder prediction. Note that different software use different definitions of ...

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