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In computer science, an FM-index is a compressed full-text substring index based on the Burrows–Wheeler transform, with some similarities to the suffix array.It was created by Paolo Ferragina and Giovanni Manzini, [1] who describe it as an opportunistic data structure as it allows compression of the input text while still permitting fast substring queries.
In computer science, a substring index is a data structure which gives substring search in a text or text collection in sublinear time. Once constructed from a document or set of documents, a substring index can be used to locate all occurrences of a pattern in time linear or near-linear in the pattern size, with no dependence or only logarithmic dependence on the document size.
The following is a partial list of available software products whose predominant purpose is to perform full-text indexing and searching. Some of these are accompanied with detailed descriptions of their theory of operation or internal algorithms, which can provide additional insight into how full-text search may be accomplished.
A string-searching algorithm, sometimes called string-matching algorithm, is an algorithm that searches a body of text for portions that match by pattern. A basic example of string searching is when the pattern and the searched text are arrays of elements of an alphabet ( finite set ) Σ.
Python supports a wide variety of string operations. Strings in Python are immutable, so a string operation such as a substitution of characters, that in other programming languages might alter the string in place, returns a new string in Python. Performance considerations sometimes push for using special techniques in programs that modify ...
Suffix arrays are closely related to suffix trees: . Suffix arrays can be constructed by performing a depth-first traversal of a suffix tree. The suffix array corresponds to the leaf-labels given in the order in which these are visited during the traversal, if edges are visited in the lexicographical order of their first character.
Reducing the range of any index to a single value effectively eliminates that index. This feature can be used, for example, to extract one-dimensional slices (vectors: in 3D, rows, columns, and tubes [1]) or two-dimensional slices (rectangular matrices) from a three-dimensional array. However, since the range can be specified at run-time, type ...
For example, in the Pascal programming language, the declaration type MyTable = array [1.. 4, 1.. 2] of integer, defines a new array data type called MyTable. The declaration var A: MyTable then defines a variable A of that type, which is an aggregate of eight elements, each being an integer variable identified by two indices.