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In bioinformatics, the general feature format (gene-finding format, generic feature format, GFF) is a file format used for describing genes and other features of DNA, RNA and protein sequences. GFF Versions
Some proteins and protein complexes are built from the products of several genes (each gene contributing a polypeptide subunit), which means that the protein or complex will not have the same name or symbol as any one gene. For example, a particular protein called "example" (symbol "EXAMP") may have 2 chains (subunits), which are encoded by 2 ...
The birth rate in Brazil for the December months from 2010 to 2016; Figure C: Example of Box Plot: number of glycines in the proteome of eight different organisms (A-H); Figure D: Example of a scatter plot. Line graphs represent the variation of a value over another metric, such as time. In general, values are represented in the vertical axis ...
The population mean of the equivalent panmictic is found as [a (p •-q •) + 2 p • q • d] + mp. Using the example gene effects (white label "9" in the diagram), this mean is = 37.87. The equivalent mean in the dispersed bulk is 36.94 (black label "10"), which is depressed by the amount 0.93.
Thus, the examples above would be a multi-FASTA file if taken together. Modern bioinformatics programs that rely on the FASTA format expect the sequence headers to be preceded by ">". The sequence is generally represented as "interleaved", or on multiple lines as in the above example, but may also be "sequential", or on a single line.
68023 Ensembl ENSG00000258429 ENSMUSG00000078931 UniProt Q9HBH1 S4R2K0 RefSeq (mRNA) NM_022341 NM_026513 RefSeq (protein) NP_071736 NP_080789 Location (UCSC) Chr 16: 69.33 – 69.33 Mb Chr 8: 107.77 – 107.78 Mb PubMed search Wikidata View/Edit Human View/Edit Mouse Peptide deformylase, mitochondrial is an enzyme that in humans is encoded by the PDF gene. References ^ a b c GRCh38: Ensembl ...
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The Gene transfer format (GTF) is a file format used to hold information about gene structure. It is a tab-delimited text format based on the general feature format (GFF), but contains some additional conventions specific to gene information. A significant feature of the GTF that can be validated: given a sequence and a GTF file, one can check ...