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The TM-score indicates the similarity between two structures by a score between (,], where 1 indicates a perfect match between two structures (thus the higher the better). [1] Generally scores below 0.20 corresponds to randomly chosen unrelated proteins whereas structures with a score higher than 0.5 assume roughly the same fold. [ 2 ]
TM-score – a different structure comparison measure; Longest continuous segment (LCS) — A different structure comparison measure; Global distance calculation (GDC_sc, GDC_all) — Structure comparison measures that use full-model information (not just α-carbon) to assess similarity
The goal of a forecaster is to maximize the score and for the score to be as large as possible, and −0.22 is indeed larger than −1.6. If one treats the truth or falsity of the prediction as a variable x with value 1 or 0 respectively, and the expressed probability as p , then one can write the logarithmic scoring rule as x ln( p ) + (1 − ...
By the original design the GDT algorithm calculates 20 GDT scores, i.e. for each of 20 consecutive distance cutoffs (0.5 Å, 1.0 Å, 1.5 Å, ... 10.0 Å). [2] For structure similarity assessment it is intended to use the GDT scores from several cutoff distances, and scores generally increase with increasing cutoff.
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1 Max in TM-score equation. 1 comment. Toggle the table of contents. Talk: Template modeling score. Add languages. Page contents not supported in other languages.
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