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ImageJ is a Java-based image processing program developed at the National Institutes of Health and the Laboratory for Optical and Computational Instrumentation (LOCI, University of Wisconsin). [ 2 ] [ 3 ] Its first version, ImageJ 1.x, is developed in the public domain , while ImageJ2 and the related projects SciJava , ImgLib2 , and SCIFIO are ...
Download QR code; Print/export ... One of Fiji's principal aims is to make the installation of ImageJ, Java, Java 3D, the plugins, and further convenient components ...
ImageJ: Image processing program developed at the National Institutes of Health. See ImageJ2 and FIJI for modified and extended versions. Wayne Rasband (NIH) 1997: 1.54k [15] 2024-09-16 Free Public domain: ImageMagick: Command line software suite for displaying, converting, and editing raster image files ImageMagick Studio LLC 1990: 7.1.1-43 ...
Image SXM is an image analysis software specialized in scanning microscope images. It is based on the public domain software NIH Image (now ImageJ from the National Institutes of Health) and extended to handle scanning microscope images, especially of the SxM formats (SAM, SCM, SEM, SFM, SLM, SNOM, SPM, STM), hence its name.
Pre-trained workflows can be executed directly from ImageJ/Fiji using the ilastik-ImageJ plugin. [ 4 ] Pre-trained ilastik Pixel Classification workflows can be run directly in Python with the ilastik Python package, [ 5 ] which is available via conda.
IMOD includes over 180 command line programs listed here and three main GUI programs: . 3dmod - IMOD's main GUI used to view and segment images and 3D vector models.; Midas - A program used to align images over the top of each other, typically to apply fine adjustments after automatic cross-correlation.
The software mainly consists of a number of command-line interface utilities for manipulating images. ImageMagick does not have a robust graphical user interface to edit images as do Adobe Photoshop and GIMP, but does include – for Unix-like operating systems – a basic native X Window GUI (called IMDisplay) for rendering and manipulating images and API libraries for many programming languages.
CellProfiler interfaces with the high-performance scientific libraries NumPy and SciPy for many mathematical operations, the Open Microscopy Environment [11] Consortium’s Bio-Formats library for reading more than 100 image file formats, ImageJ for use of plugins and macros, and ilastik for pixel-based classification. [12]