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The CARD is a compilation of sequence data and identification of resistance genes in unannotated genome sequences. [7] The database "includes bioinformatic tools that enable the identification of antibiotic resistance genes from whole- or partial-genome sequence data, including unannotated raw sequence assembly contigs”. [7]
ResFinder is a database that captures antimicrobial resistance genes from whole-genome data sets. [1] The database uses BLAST in order to accomplish this. The database allows inputs of full sequences, partial sequences, or short sequence reads from other sequencing platforms. [1] Additionally, users can set their own threshold for detection.
The Comprehensive Antibiotic Resistance Database (CARD) is a biological database that collects and organizes reference information on antimicrobial resistance genes, proteins and phenotypes. [ 1 ] [ 2 ] The database covers all types of drug classes and resistance mechanisms and structures its data based on an ontology.
The presence of antibiotic resistance genes is often linked to the production of antibiotics. [6] Stretpomyces sp. myrophorea has been recorded to be resistant to 28 antibiotics and sensitive to eight antibiotics in one series of tests. The antibiotics were tested at breakpoint concentrations recommended by The European Committee on ...
The genomic epidemiological database for global identification of microorganisms or global microbial identifier [1] is a platform for storing whole genome sequencing data of microorganisms, for the identification of relevant genes and for the comparison of genomes to detect and track-and-trace infectious disease outbreaks and emerging pathogens. [2]
Examples of BioNumerics applications are whole genome Multi Locus Sequence Typing (wgMLST), whole genome Single Nucleotide Polymorphisms (wgSNP), genome comparison, identification based on MALDI-TOF Mass Spectrometry, PFGE typing, Amplified Fragment Length Polymorphism (AFLP) typing, sequence-based typing of viruses, antibiotic resistance ...