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an online tool for phylogenetic tree view (newick format) that allows multiple sequence alignments to be shown together with the trees (fasta format) EvolView [3] an online tool for visualizing, annotating and managing phylogenetic trees IcyTree [4] Client-side Javascript SVG viewer for annotated rooted trees. Also supports phylogenetic networks
Constructing skill trees (CST) is a hierarchical reinforcement learning algorithm which can build skill trees from a set of sample solution trajectories obtained from demonstration. CST uses an incremental MAP ( maximum a posteriori ) change point detection algorithm to segment each demonstration trajectory into skills and integrate the results ...
Cartesian trees are defined using binary trees, which are a form of rooted tree. To construct the Cartesian tree for a given sequence of distinct numbers, set its root to be the minimum number in the sequence, [1] and recursively construct its left and right subtrees from the subsequences before and after this number, respectively. As a base ...
The multiple sequence alignment problem is generally based on pairwise sequence alignment and currently, for a pairwise sequence alignment problem, biologists can use a dynamic programming approach to obtain its optimal solution. However, the multiple sequence alignment problem is still one of the more challenging problems in bioinformatics.
To traverse arbitrary trees (not necessarily binary trees) with depth-first search, perform the following operations at each node: If the current node is empty then return. Visit the current node for pre-order traversal. For each i from 1 to the current node's number of subtrees − 1, or from the latter to the former for reverse traversal, do:
Name First elements Short description OEIS Mersenne prime exponents : 2, 3, 5, 7, 13, 17, 19, 31, 61, 89, ... Primes p such that 2 p − 1 is prime.: A000043 ...
0 8 4 12 2 10 6 14 1 9 5 13 3 11 7 15 Each permutation in this sequence can be generated by concatenating two sequences of numbers: the previous permutation, with its values doubled, and the same sequence with each value increased by one.
Phylogenetic trees generated by computational phylogenetics can be either rooted or unrooted depending on the input data and the algorithm used. A rooted tree is a directed graph that explicitly identifies a most recent common ancestor (MRCA), [citation needed] usually an inputed sequence that is not represented in the input.