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  2. Protein quaternary structure - Wikipedia

    en.wikipedia.org/wiki/Protein_quaternary_structure

    The smallest unit forming a homo-oligomer, i.e. one protein chain or subunit, is designated as a monomer, subunit or protomer. The latter term was originally devised to specify the smallest unit of hetero-oligomeric proteins, but is also applied to homo-oligomeric proteins in current literature.

  3. Macromolecule - Wikipedia

    en.wikipedia.org/wiki/Macromolecule

    Chemical structure of a polypeptide macromolecule. A macromolecule is a very large molecule important to biological processes, such as a protein or nucleic acid. It is composed of thousands of covalently bonded atoms. Many macromolecules are polymers of smaller molecules called monomers.

  4. Amyloid - Wikipedia

    en.wikipedia.org/wiki/Amyloid

    In the simplest model of 'nucleated polymerization' (marked by red arrows in the figure below), individual unfolded or partially unfolded polypeptide chains (monomers) convert into a nucleus (monomer or oligomer) via a thermodynamically unfavourable process that occurs early in the lag phase. [56]

  5. Turn (biochemistry) - Wikipedia

    en.wikipedia.org/wiki/Turn_(biochemistry)

    According to one definition, a turn is a structural motif where the C α atoms of two residues separated by a few (usually 1 to 5) peptide bonds are close (less than 7 Å [0.70 nm]). [1] The proximity of the terminal C α atoms often correlates with formation of an inter main chain hydrogen bond between the corresponding residues. Such hydrogen ...

  6. Zimm–Bragg model - Wikipedia

    en.wikipedia.org/wiki/Zimm–Bragg_model

    In statistical mechanics, the Zimm–Bragg model is a helix-coil transition model that describes helix-coil transitions of macromolecules, usually polymer chains. Most models provide a reasonable approximation of the fractional helicity of a given polypeptide; the Zimm–Bragg model differs by incorporating the ease of propagation (self-replication) with respect to nucleation.

  7. Ribbon diagram - Wikipedia

    en.wikipedia.org/wiki/Ribbon_diagram

    Round rope that gradually flattens out into a thin helical ribbon. Other features Polypeptide direction, NH 2 and COOH termini Small arrows on one or both of the termini, or letters. For β-strands, the direction of the arrow is sufficient. Today, the direction of the polypeptide chain is often indicated by a colour ramp. Disulfide bonds

  8. Levinthal's paradox - Wikipedia

    en.wikipedia.org/wiki/Levinthal's_paradox

    Levinthal's paradox is a thought experiment in the field of computational protein structure prediction; protein folding seeks a stable energy configuration. An algorithmic search through all possible conformations to identify the minimum energy configuration (the native state) would take an immense duration; however in reality protein folding happens very quickly, even in the case of the most ...

  9. Heterotrimeric G protein - Wikipedia

    en.wikipedia.org/wiki/Heterotrimeric_G_protein

    Alpha chain is yellow. Beta and gamma chains are blue. 3D structure of a heterotrimeric G protein Heterotrimeric G protein , also sometimes referred to as the "large" G proteins (as opposed to the subclass of smaller, monomeric small GTPases ) are membrane-associated G proteins that form a heterotrimeric complex.