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The tomviz platform allows graphical analysis of 3D datasets, but also comes packaged with Python, NumPy, and SciPy tools to allow advanced data processing and analysis. Current version is 1.10.0. [2] In 2022 the tomviz platform was used to enable 3D visualization of specimens during an electron or cryo-electron tomography experiment. [3]
3D Slicer (Slicer) is a free and open source software package for image analysis [1] [2] and scientific visualization. Slicer is used in a variety of medical applications, including autism , multiple sclerosis , systemic lupus erythematosus , prostate cancer , lung cancer , breast cancer , schizophrenia , orthopedic biomechanics , COPD ...
Free 3D visualization and communication software for integrated, multi-disciplinary geoscience and mining data and models, which also connects to Python through geoh5py, its open-source API Mira Geoscience Ltd. Free / Proprietary Microsoft Windows: C++: Free license key is automatically emailed upon request, and the software is permanently free
VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python.The toolkit is created and supported by the Kitware team. VTK supports a various visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting ...
MayaVi is a scientific data visualizer written in Python, which uses VTK and provides a GUI via Tkinter. MayaVi was developed by Prabhu Ramachandran, is free and distributed under the BSD License. It is cross-platform and runs on any platform where both Python and VTK are available (almost any Unix, Mac OS X, or Windows).
The GPlates software platform comprises the GPlates desktop software, command line tools, GPlates Python library (pyGPlates), GPlates web service and web application, a high-level Python encapsulation package GPlately, a plate tectonic toolkit PlateTectonicTools and a data server which serves plate reconstruction model datasets from the cloud.
Java 3D applet or standalone program: Ovito: MM XRD EM MD: Free open-source: Python [13] [14] PyMOL: MM XRD SMI EM: Open-source [15] Python [16] [self-published source?] According to the author, almost 1/4 of all published images of 3D protein structures in the scientific literature were made via PyMOL. [citation needed] RasMol: Free open ...
Amira (ah-MEER-ah) is a software platform for visualization, processing, and analysis of 3D and 4D data. It is being actively developed by Thermo Fisher Scientific in collaboration with the Zuse Institute Berlin (ZIB), and commercially distributed by Thermo Fisher Scientific — together with its sister software Avizo.