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2. List of protein subcellular localization prediction tools

   en.wikipedia.org/wiki/List_of_protein_sub...

   ClubSub-P is a database of cluster-based subcellular localization (SCL) predictions for Archaea and Gram negative bacteria. [14] 2011 CoBaltDB: CoBaltDB is a novel powerful platform that provides easy access to the results of multiple localization tools and support for predicting prokaryotic protein localizations. [15] 2010 ComiR

3. List of open-source bioinformatics software - Wikipedia

   en.wikipedia.org/wiki/List_of_open-source...

   Software platform, allows organizations to integrate, analyze, and share complex biomedical data Linux, macOS, Windows: Apache: LabKey Software Foundation LAMMPS: Molecular dynamics program written in C++: Linux, macOS, Windows: Apache: Sandia National Laboratories. mothur: Software for analysis of 16S rRNA gene amplicon sequence data Linux ...

4. Protein Data Bank - Wikipedia

   en.wikipedia.org/wiki/Protein_Data_Bank

   Other non-free, shareware programs include ICM-Browser, [23] MDL Chime, UCSF Chimera, Swiss-PDB Viewer, [24] StarBiochem [25] (a Java-based interactive molecular viewer with integrated search of protein databank), Sirius, and VisProt3DS [26] (a tool for Protein Visualization in 3D stereoscopic view in anaglyph and other modes), and Discovery ...

5. RasMol - Wikipedia

   en.wikipedia.org/wiki/RasMol

   RasMol includes a scripting language, to perform many functions such as selecting certain protein chains, changing colors, etc. Jmol and Sirius software have incorporated this language into their commands. Protein Data Bank (PDB) files can be downloaded for visualization from members of the Worldwide Protein Data Bank (wwPDB).

6. Structural alignment software - Wikipedia

   en.wikipedia.org/wiki/Structural_alignment_software

   download server: A.Stivala et al. 2010 RCSB PDB Protein Comparison Tool Provides CE, FATCAT, CE variation for Circular Permutations, Sequence Alignments: Cα: Pair: yes: server download: A. Prlic et al. 2010 CSR Maximal common 3D motif; non-parametric; outputs pairwise correspondence; works also on small molecules: SSE or Cα: Pair: No: server ...

7. APBS (software) - Wikipedia

   en.wikipedia.org/wiki/APBS_(software)

   APBS (previously also Advanced Poisson-Boltzmann Solver) is a free and open-source software for solving the equations of continuum electrostatics intended primarily for the large biomolecular systems. [1] [2] It is available under the BSD license. PDB2PQR prepares the protein structure files from Protein Data Bank for use with APBS.