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UniProt is a freely accessible database of protein sequence and functional information, many entries being derived from genome sequencing projects.It contains a large amount of information about the biological function of proteins derived from the research literature.
Flexible and fast read mapping program (twice as fast as BWA), achieves a mapping sensitivity comparable to Stampy. Internally uses a memory efficient index structure (hash table) to store positions of all 13-mers present in the reference genome. Mapping regions where pairwise alignments are required are dynamically determined for each read.
RapMap A Rapid, Sensitive and Accurate Tool for Mapping RNA-seq Reads to Transcriptomes. recursiveCorPlot Correlation based clustering for RNA-seq data (+ ggplot corrplot-like interface - R-package: recursiveCorPlot). [66] RNAeXpress Can be run with Java GUI or command line on Mac, Windows, and Linux. It can be configured to perform read ...
A fingerprint is a group of conserved motifs used to characterise a protein family; its diagnostic power is refined by iterative scanning of UniProt. Usually the motifs do not overlap, but are separated along a sequence, though they may be contiguous in 3D-space.
In this mode the input is a project file that can be generated by the DeepView (Swiss Pdb Viewer) visualization and structural analysis tool, [4] to allow the user to examine and manipulate the target-template alignment in its structural context. In all three cases the output is a pdb file with atom coordinates of the model or a DeepView ...
The source code for the package is distributed freely and compiled binaries are available for Linux, macOS and Windows platforms. As of 2017, the Genome Biology paper describing the original Bowtie method has been cited more than 11,000 times. [3] Bowtie is open-source software and is currently maintained by Johns Hopkins University.
Windows: Originated in NASA World Wind: Estereografica Web [15] Stereographic projection and fault kinematics Reyuntec Public domain Cross-platform: ASP.net Free web application (english and spanish) Generic Mapping Tools [16] Map generation and analysis Lamont–Doherty and University of Hawaii: GPL: Cross-platform: C: Implemented in OpendTect ...
This is a list of causal mapping software. Causal mapping software enables users to create and/or work with causal maps: qualitative networks of interconnected nodes in which each connection represents a causal link. Software and services for concept mapping can also be used for causal mapping if they allow the creation of directed links.