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  2. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Suite of packages for sequencing, searching, etc. written in C: Linux, macOS, Unix, Windows [4] GPL and LGPL: Collaborative project Galaxy: Scientific workflow and data integration system Unix-like: Academic Free: Collaborative project GenePattern: Scientific workflow system that provides access to hundreds of genomic analysis tools

  3. Molecular Inversion Probe - Wikipedia

    en.wikipedia.org/wiki/Molecular_Inversion_Probe

    A DNA barcode system that uniquely identifies each plausible combination of individual and genomic locus is represented as DNA tags that were inserted into the linker region of the probes. Thus, sequences from the captured regions would include the barcode, allowing the non-ambiguous determination of the individual and the genomic locus that ...

  4. In silico PCR - Wikipedia

    en.wikipedia.org/wiki/In_silico_PCR

    Probable PCR products can be found for linear and circular templates using standard or inverse PCR as well as for multiplex PCR. Dicey [15] is free software that outputs in-silico PCR products from primer sets provided in a FASTA file. It is fast (through use of a genome's FM-index) and can account for primer melting temperature and tolerated ...

  5. Polony sequencing - Wikipedia

    en.wikipedia.org/wiki/Polony_sequencing

    Polony sequencing is generally performed on paired-end tags library that each molecule of DNA template is of 135 bp in length with two 17–18 bp paired genomic tags separated and flanked by common sequences. The current read length of this technique is 26 bases per amplicon and 13 bases per tag, leaving a gap of 4–5 bases in each tag.

  6. OLIGO Primer Analysis Software - Wikipedia

    en.wikipedia.org/wiki/OLIGO_Primer_Analysis_Software

    OLIGO Primer Analysis Software is a software for DNA primer design. [1] [2] The first paper describing this software was published in 1989. [3] The program is a real time PCR primer and probe search and analysis tool. It additionally performs siRNA and molecular beacon searches, open reading frame analysis, and restriction enzyme analysis.

  7. Combined bisulfite restriction analysis - Wikipedia

    en.wikipedia.org/wiki/Combined_Bisulfite...

    The first few steps of COBRA, and the molecular changes caused by each step to methylated and unmethylated CpG sites. Combined Bisulfite Restriction Analysis (or COBRA) is a molecular biology technique that allows for the sensitive quantification of DNA methylation levels at a specific genomic locus on a DNA sequence in a small sample of genomic DNA. [1]