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Client-side Javascript SVG viewer for annotated rooted trees. Also supports phylogenetic networks. Iroki [5] Automatic customization and visualization of phylogenetic trees. iTOL - interactive Tree Of Life [6] annotate trees with various types of data and export to various graphical formats; scriptable through a batch interface. Microreact [7]
YANG is a modular language representing data structures in an XML tree format. The data modeling language comes with a number of built-in data types. Additional application specific data types can be derived from the built-in data types. More complex reusable data structures can be represented as groupings.
MNHN-Tree-Tools. MNHN-Tree-Tools is an opensource phylogenetics inference software working on nucleic and protein sequences. Clustering of DNA or protein sequences and phylogenetic tree inference from a set of sequences. At the core it employs a distance-density based approach.
Clustal Omega, ClustalW2, MAFFT, MUSCLE, BioJava are integrated to construct alignment. Tree calculation tool calculates phylogenetic tree using BioJava API and lets user draw trees using Archaeopteryx. Software is package of 7 interactive visual tools for multiple sequence alignments. Major focus is manipulating large alignments.
DOT is a graph description language, developed as a part of the Graphviz project. DOT graphs are typically stored as files with the .gv or .dot filename extension — .gv is preferred, to avoid confusion with the .dot extension used by versions of Microsoft Word before 2007. [1] dot is also the name of the main program to process DOT files in ...
Alpine (email client) ALTQ. Amaya (web editor) Ambient (desktop environment) American Fuzzy Lop (software) Anaconda (installer) AOLserver. Apache Celix. Apache Guacamole.
Details. It is used to parse source code into concrete syntax trees usable in compilers, interpreters, text editors, and static analyzers. [1][2] It is specialized for use in text editors, as it supports incremental parsing for updating parse trees while code is edited in real time, [3] and provides a built-in S-expression query system for ...
VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python.The toolkit is created and supported by the Kitware team. VTK supports a various visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting ...