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The database connects pathogens to their phenotypes using multiple databases such as NCBI, Human Disease Ontology [2] Human Phenotype Ontology, [3] Mammalian Phenotype Ontology, [4] PubChem, SIDER [5] and CARD. [6] Pathogen-disease associations were gathered mainly through the CDC and the List of Infectious Diseases page on Wikipedia. The ...
The human Proteinpedia is based on HPRD (Human protein reference database)which is a repository hosting over 30,000 human proteins. However it is unclear how many of these are unique proteins Human Protein Atlas: The Swedish Government It contains roughly 10 million IHC images of a bit less than 25,000 antibodies.
The Virus Pathogen Database and Analysis Resource (ViPR) [1] [2] [3] is an integrative and comprehensive publicly available database and analysis resource to search, analyze, visualize, save and share data for viral pathogens in the U.S. National Institute of Allergy and Infectious Diseases (NIAID) Category A-C Priority Pathogen lists for biodefense research, and other viral pathogens causing ...
In 2022, GISAID added Mpox virus [46] and Respiratory syncytial virus (RSV) [47] to the list of pathogens supported by its database. Indonesia's Ministry of Health announced in November 2023 the establishment of GISAID Academy in Bali, to focus on bioinformatics education, advance pathogen genomic surveillance, and increased regional response ...
In response, many publicly accessible databases and other resources have been created, including the NCBI pathogen detection program, the Pathosystems Resource Integration Centre (PATRIC), [22] Pathogenwatch, [23] the Virulence Factor Database (VFDB) of pathogenic bacteria, [24] [3] [21] the Victors database of virulence factors in human and ...
A human pathogen is a pathogen (microbe or microorganism such as a virus, bacterium, prion, or fungus) that causes disease in humans. The human physiological defense against common pathogens (such as Pneumocystis ) is mainly the responsibility of the immune system with help by some of the body's normal microbiota .
The Pathogen-Host Interactions database (PHI-base) [1] is a biological database that contains manually curated information on genes experimentally proven to affect the outcome of pathogen-host interactions. The database has been maintained by researchers at Rothamsted Research and external collaborators since 2005.
VectorBase [1] [2] is one of the five Bioinformatics Resource Centers (BRC) funded by the National Institute of Allergy and Infectious Diseases (NIAID), a component of the National Institutes of Health (NIH), which is an agency of the United States Department of Health and Human Services.
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