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The expected values needed in the covariance formula are estimated using the sample mean, e.g. = = and the covariance matrix is estimated by the sample covariance matrix (,) , where the angular brackets denote sample averaging as before except that the Bessel's correction should be made to avoid bias.
The sample covariance matrix (SCM) is an unbiased and efficient estimator of the covariance matrix if the space of covariance matrices is viewed as an extrinsic convex cone in R p×p; however, measured using the intrinsic geometry of positive-definite matrices, the SCM is a biased and inefficient estimator. [1]
The sample covariance matrix has in the denominator rather than due to a variant of Bessel's correction: In short, the sample covariance relies on the difference between each observation and the sample mean, but the sample mean is slightly correlated with each observation since it is defined in terms of all observations.
The reason the sample covariance matrix has in the denominator rather than is essentially that the population mean is not known and is replaced by the sample mean ¯. If the population mean E ( X ) {\displaystyle \operatorname {E} (\mathbf {X} )} is known, the analogous unbiased estimate is given by
With any number of random variables in excess of 1, the variables can be stacked into a random vector whose i th element is the i th random variable. Then the variances and covariances can be placed in a covariance matrix, in which the (i, j) element is the covariance between the i th random variable and the j th one.
The Wishart distribution arises as the distribution of the sample covariance matrix for a sample from a multivariate normal distribution. It occurs frequently in likelihood-ratio tests in multivariate statistical analysis. It also arises in the spectral theory of random matrices [citation needed] and in multidimensional Bayesian analysis. [5]
The next expression states equivalently that the variance of the sum is the sum of the diagonal of covariance matrix plus two times the sum of its upper triangular elements (or its lower triangular elements); this emphasizes that the covariance matrix is symmetric. This formula is used in the theory of Cronbach's alpha in classical test theory.
In Julia, the CovarianceMatrices.jl package [11] supports several types of heteroskedasticity and autocorrelation consistent covariance matrix estimation including Newey–West, White, and Arellano. In R , the packages sandwich [ 6 ] and plm [ 12 ] include a function for the Newey–West estimator.