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Several of the CPK colors refer mnemonically to colors of the pure elements or notable compound. For example, hydrogen is a colorless gas, carbon as charcoal, graphite or coke is black, sulfur powder is yellow, chlorine is a greenish gas, bromine is a dark red liquid, iodine in ether is violet, amorphous phosphorus is red, rust is dark orange-red, etc.
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The XYZ file format is a chemical file format.There is no formal standard and several variations exist, but a typical XYZ format specifies the molecule geometry by giving the number of atoms with Cartesian coordinates that will be read on the first line, a comment on the second, and the lines of atomic coordinates in the following lines. [1]
Atomicity is the total number of atoms present in a molecule of an element. For example, each molecule of oxygen (O 2) is composed of two oxygen atoms. Therefore, the atomicity of oxygen is 2. [1] In older contexts, atomicity is sometimes equivalent to valency. Some authors also use the term to refer to the maximum number of valencies observed ...
The color of chemicals is a physical property of chemicals that in most cases comes from the excitation of electrons due to an absorption of energy performed by the chemical. The study of chemical structure by means of energy absorption and release is generally referred to as spectroscopy .
A chemical element, often simply called an element, is a type of atom which has a specific number of protons in its atomic nucleus (i.e., a specific atomic number, or Z). [ 1 ] The definitive visualisation of all 118 elements is the periodic table of the elements , whose history along the principles of the periodic law was one of the founding ...
A partially ordered set with least element 0 is called atomistic (not to be confused with atomic) if every element is the least upper bound of a set of atoms. The linear order with three elements is not atomistic (see Fig. 2). Atoms in partially ordered sets are abstract generalizations of singletons in set theory (see Fig. 1).
As the original software license was a permissive licence, they were able to remove it; new versions are no longer released under the Python license, but under a custom license (granting broad use, redistribution, and modification rights, but assigning copyright to any version to Schrödinger, LLC.), [2] and some of the source code is no longer ...