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The Plant Genome Mapping Laboratory (PGML) [1] is a department of the University of Georgia, directed by Dr. Andrew H. Paterson.Research focuses on the study of major crop species such as sorghum and cotton, as well as other species such as Bermuda Grass, Brassica and Peanut.
Genome size Number of genes predicted Organization Year of completion Assembly status Beta vulgaris (sugar beet) Chenopodiaceae: Crop plant: 714–758 Mbp: 27,421: 2013 [38] Chenopodium quinoa: Chenopodiaceae: Crop plant 1.39–1.50 Gb 44,776 2017 [39] 3,486 scaffolds, scaffold N50 of 3.84 Mb, 90% of the assembled genome is contained in 439 ...
The 156 kb plastome gene map of Nicotiana tabacum. The 154 kb plastid genome map of a model flowering plant (Arabidopsis thaliana: Brassicaceae). The highly reduced, 27 kb plastome map of the parasitic Hydnora visseri. A plastome is the genome of a plastid, a type of organelle found in plants and in a variety of protoctists.
Optical mapping [1] is a technique for constructing ordered, genome-wide, high-resolution restriction maps from single, stained molecules of DNA, called "optical maps". By mapping the location of restriction enzyme sites along the unknown DNA of an organism, the spectrum of resulting DNA fragments collectively serves as a unique "fingerprint" or "barcode" for that sequence.
Many plant species (especially agriculturally manipulated ones) [29] are known to have undergone large genome-wide changes through duplication of the whole genome. The rice and the wheat genomes, for example, can have 4-6 copies of whole genomes [ 29 ] ( wheat ) whereas animals typically only have 2 ( diploidy ).
A genetic map was constructed to anchor the assembled genome. 72.8% of the assembled sequences were successfully anchored onto the seven chromosomes. Another plant genome that combined NGS with Sanger sequencing was the genome of Theobroma cacao, 2010, [34] an economically important tropical fruit tree crop and the primary source of cocoa. The ...
The temperature at which renaturation occurs can be regulated so that little or no sequence mismatch is tolerated. The rate at which a sequence finds a complementary strand with which to hybridize is directly related to how common that sequence is in the genome. In other words, those sequences that are extremely abundant (on average) find ...
Association mapping, by contrast, takes advantage of historic recombination, and is performed by scanning a genome for SNPs in linkage disequilibrium with a trait of interest. Association mapping has advantages over linkage analysis in that it can map with high resolution and has high allelic richness, however, it also requires extensive ...