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A consensus logo is a simplified variation of a sequence logo that can be embedded in text format. Like a sequence logo, a consensus logo is created from a collection of aligned protein or DNA/RNA sequences and conveys information about the conservation of each position of a sequence motif or sequence alignment [1] [4].
PWMs are often represented graphically as sequence logos.. A position weight matrix (PWM), also known as a position-specific weight matrix (PSWM) or position-specific scoring matrix (PSSM), is a commonly used representation of motifs (patterns) in biological sequences.
A DNA sequence motif represented as a sequence logo for the LexA-binding motif.. In biology, a sequence motif is a nucleotide or amino-acid sequence pattern that is widespread and usually assumed to be related to biological function of the macromolecule.
Sequence logos provide a compact and informative visualization of conserved sequence and variability. [ 10 ] Multiple sequence alignment : Multiple sequence alignment viewers, such as Jalview and MEGA , provide interactive platforms for visualizing and analyzing multiple sequence alignment .
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The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore an alignment's phylogenetic implications; or, to predict the structure and functional properties of a specific sequence, e.g., comparative modelling.
Logo (programming language) Logo Yazılım, Turkish business software company; Logo, the shortened word for a production logo, where a short animation plays to show a logo of a company; Honda Logo, a car; Sequence logo, bioinformatics; Siemens LOGO!, a Programmable logic controller
Digital on-screen graphic – Watermark-like TV station logo; Lower third – Graphic overlay in lower area of TV screen; Opening credits – Display of names; Post-credits scene – Short sequence that appears after all or part of the final credits; Title sequence – Introductory sequence in films and television