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Loblolly pine is the first among over 100 species of Pinus to have its complete genome sequenced. As of March 2014, it was the organism having the largest sequenced genome size. Its genome, with 22 billion base pairs, is seven times larger than that of humans.
Linux, macOS, Windows: BSD: Laura Luebbert and Lior Pachter: GROMACS: Molecular dynamics package mainly designed for simulations of proteins, lipids and nucleic acids. Linux, macOS, Windows: Common Public 1.0 GenoViz Integrated Genome Browser: Java-based desktop genome browser: Linux, macOS, Windows: Common Public 1.0 GenoViz InterMine
Pinus taeda (Loblolly pine) Pinales: Timber 20.15 Gb 9,024 [14] 12 2014 [18] [19] [20] N50 scaffold size: 66.9 kbp Pinus lambertiana (Sugar pine) Pinales: Timber; with the largest genomes among the pines; the largest pine species 31 Gb 13,936 12 2016 [14] 61.5X sequence coverage, platforms used: Hiseq 2000, Hiseq 2500, GAIIx, MiSeq Ginkgo ...
Genome Editing and Visualization Apollo: a Java application for viewing and editing genome annotations [7] [8] GBrowse: a CGI application for displaying genome annotations [9] [10] JBrowse: a JavaScript application for displaying genome annotations [11] Pathway Tools: a genome browser with a comparative mode; Comparative Genomics
It can be used directly or through mVISTA, Genome VISTA, or VISTA Browser. A database of tissue-specific human enhancers is available through VISTA Enhancer Browser. [1] GenomeVISTA allows the comparison of sequences with whole genome assemblies. It will automatically find the ortholog, obtain the alignment and VISTA plot.
GenomeSpace is an environment for genomics software tools and applications. It helps users manage their analysis workflows involving multiple diverse tools, including web applications and desktop tools and facilitates the transfer of data between tools via automatic format conversion.
The HyperBrowser allows a range of genomic investigations (for example, including regulation of gene expression, disease association or epigenetic modifications of the genome). [4] The primary focus of the system is on statistical inference on relations between genomic tracks, though simpler descriptive statistics and analysis of individual ...
Cross-platform - macOS, Linux, Windows, other with Java Virtual Machine. Official website: Jevtrace Integrated with structure viewer WebMol: No No A multivalent browser for sequence alignment, phylogeny, and structure. Performs an interactive Evolutionary Trace and other phylogeny inspired analysis. FASTA, MSF, Clustal, PHYLIP, Newick, PDB
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related to: pinus taeda genome browser pcopera.com has been visited by 1M+ users in the past month