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The 1000 Plant Transcriptomes Initiative (1KP) was an international research effort to establish the most detailed catalogue of genetic variation in plants. It was announced in 2008 and headed by Gane Ka-Shu Wong and Michael Deyholos of the University of Alberta .
Contains manual curations of public transcriptome datasets, focusing on medical and plant biology data. Individual experiments are normalised across the full database to allow comparison of gene expression across diverse experiments. Full functionality requires licence purchase, with free access to a limited functionality. RefEx [172] DDBJ: All
Ensembl genome database project is a scientific project at the European Bioinformatics Institute, which provides a centralized resource for geneticists, molecular biologists and other researchers studying the genomes of our own species and other vertebrates and model organisms.
The site is a resource for identifying taxonomic information (scientific names) as well as common names [3] on more than 500,000 accessions (distinct varieties, cultivars etc.) of plants covering 10,000 species; [4] [5] both economically important ones [3] and wild species.
RNA-Seq data may be directly assembled into transcripts using sequence assembly.Two main categories of sequence assembly are often distinguished: . de novo transcriptome assembly - especially important when a reference genome is not available for a given species.
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