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DROP The detection of RNA Outliers Pipeline (DROP) is an integrative workflow to detect aberrant expression, aberrant splicing, and mono-allelic expression from raw sequencing files. [ 61 ] EBSeq is a Bioconductor package for identifying genes and isoforms differentially expressed (DE) across two or more biological conditions in an RNA-seq ...
An expression vector, otherwise known as an expression construct, is usually a plasmid or virus designed for gene expression in cells. The vector is used to introduce a specific gene into a target cell, and can commandeer the cell's mechanism for protein synthesis to produce the protein encoded by the gene.
MacVector is a commercial sequence analysis application for Apple Macintosh computers running Mac OS X.It is intended to be used by molecular biologists to help analyze, design, research and document their experiments in the laboratory.
Vector combine Rotate & move Polylines Spline curves Lines to curves cmd. & vice versa Vector shapes Easy Trace Yes Yes Yes Yes Yes Yes Yes Graphic Tracer Professional N/A Yes Yes Yes Yes Yes Yes Adobe Illustrator Yes Yes Yes Yes Yes No Yes Potrace N/A N/A N/A N/A N/A N/A N/A ImageTracer N/A N/A N/A N/A N/A N/A N/A Scan2CAD Yes Yes Yes Yes Yes Yes
Editing of GenBank files, plasmid drawing, ABI chromatograms, FASTA, FASTQ, GenBank: Free, GPL 3 ? ? Official website: Alignment Annotator Yes By sequence or mixed sequence and structure Includes Archaeopteryx: DAS and user defined annotations. Scriptable. Export to HTML, Word, Jalview. Many Free, GPL: Yes iOS, Android, MS-Mobile, Browsers ...
Slider is an application for the Illumina Sequence Analyzer output that uses the "probability" files instead of the sequence files as an input for alignment to a reference sequence or a set of reference sequences. Yes Yes No No [53] [54] 2009-2010 SOAP, SOAP2, SOAP3, SOAP3-dp SOAP: robust with a small (1-3) number of gaps and mismatches.
Vector NTI was a commercial bioinformatics software package used by many life scientists in the early 2000s to work, among other things, with nucleic acids and proteins in silico. [ 1 ] [ 2 ] It allowed researchers to, for example, plan a DNA cloning experiment on the computer before actually performing it in the lab.
A version called mPB was created by optimizing codon usage for mammalian (mouse) with a 20x increase in activity, [9] and further mutation screening generated hyPB with 10x the activity of mPB. [10] PiggyBac system have been successfully employed to express large genetic sequences, such as a doxycicline-inducible CRISPR interference system.