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Euclidean space was introduced by ancient Greeks as an abstraction of our physical space. Their great innovation, appearing in Euclid's Elements was to build and prove all geometry by starting from a few very basic properties, which are abstracted from the physical world, and cannot be mathematically proved because of the lack of more basic tools.
The Protein Data Bank (PDB) [1] is a database for the three-dimensional structural data of large biological molecules such as proteins and nucleic acids, which is overseen by the Worldwide Protein Data Bank (wwPDB).