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In chemistry, linkage isomerism or ambidentate isomerism is a form of structural isomerism in which certain coordination compounds have the same composition but differ in which atom of the ligand is bonded to the metal. Typical ligands that give rise to linkage isomers are: cyanide, CN − – isocyanide, NC −; cyanate, OCN − – isocyanate ...
In DNA-ligand binding studies, the ligand can be a small molecule, ion, [1] or protein [2] which binds to the DNA double helix. The relationship between ligand and binding partner is a function of charge, hydrophobicity, and molecular structure. Binding occurs by intermolecular forces, such as ionic bonds, hydrogen bonds and Van der Waals forces.
The metal–ligand bond can be further stabilised by a formal donation of electron density back to the ligand in a process known as back-bonding. In this case a filled, central-atom-based orbital donates density into the LUMO of the (coordinated) ligand. Carbon monoxide is the preeminent example a ligand that engages metals via back-donation.
For example, in the context of protein function, the binding of calcium to troponin in muscle cells can induce a conformational change in troponin. This allows for tropomyosin to expose the actin-myosin binding site to which the myosin head binds to form a cross-bridge and induce a muscle contraction .
The cyanate ion is an ambidentate ligand, forming complexes with a metal ion in which either the nitrogen or oxygen atom may be the electron-pair donor. It can also act as a bridging ligand. Compounds that contain the cyanate functional group, −O−C≡N, are known as cyanates or cyanate esters.
Nitrite is an ambidentate ligand and can form a wide variety of coordination complexes by binding to metal ions in several ways. [2] Two examples are the red nitrito complex [Co(NH 3) 5 (ONO)] 2+ is metastable, isomerizing to the yellow nitro complex [Co(NH 3) 5 (NO 2)] 2+. Nitrite is processed by several enzymes, all of which utilize ...
Thiocyanate can bind metals at either sulfur or nitrogen — it is an ambidentate ligand. Other factors, e.g. kinetics and solubility, sometimes influence the observed isomer. For example, [Co(NH 3) 5 (NCS)] 2+ is the thermodynamic isomer, but [Co(NH 3) 5 (SCN)] 2+ forms as the kinetic product of the reaction of thiocyanate salts with [Co(NH 3 ...
A pentadentate ligand is a ligand that coordinates via five donor atoms. [1]There are different possible ways for a ligand to arrange around an ion. For an octahedral coordination with six positions, the possible arrangements of a linear pentadentate ligand are designated by ffm s ffm a fff fmf fm a m a fm s m a fm s m s fm a m s where each letter f or s represents three consecutive donor ...