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An interactive viewer for large phylogenetic trees and networks: All [22] DensiTree A viewer capable of viewing multiple overlaid trees. All [23] FigTree: Simple Java tree viewer able to read newick and nexus tree files. Can be used to color branches and produce vector artwork. All [24] JEvTrace
MicrobeTrace is a free, browser-based web application. 2D and 3D network visualization tool, Neighbor-joining tree visualization, Gantt charts, bubbles charts, networks visualized on maps, flow diagrams, aggregate tables, epi curves, histograms, alignment viewer, and much more.
Free, CPL? Cross-platform - Mac, Windows, Linux Official website: interactive Tree Of Life (iTOL) No No ? Phylogenetic tree viewer-annotation tool which can visualise alignments directly on the tree. Various other dataset types can be displayed in addition to alignments. FASTA Proprietary, free use Yes Browser Official website: IVisTMSA No
Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees.This type of program can be used for a variety of analyses of molecular data sets, but is particularly designed for phylogenomics.
It is theoretically possible to use plugins created for Windows in the VST2 format on Linux with the help of Wine, but the project team does not recommend it. [13] Since version 6.5, it also supports VST3 plugins on all supported platforms. [14] Unlike most modern 64-bit DAW's, Ardour does not run 32bit VST's natively. [15]
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3D Viewer (formerly Mixed Reality Viewer and before that, View 3D) [2] [3] [4] is a 3D computer graphics viewer and augmented reality application that was first included in Windows 10 1703. It supports the .fbx , .3mf , .obj , and .stl and many more file formats [ 5 ] listed in features section.
A related project is LinguaPhylo (LPhy). [5] LPhy is a probabilistic programming language for defining phylogenetic analyses with a syntax similar to OpenBUGS.It provides a way to generate BEAST 2 XML files (and similar model specifications for other phylogenetics packages) without needing to write the XML by hand.