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Squared deviations from the mean (SDM) result from squaring deviations. In probability theory and statistics , the definition of variance is either the expected value of the SDM (when considering a theoretical distribution ) or its average value (for actual experimental data).
In bioinformatics, the root mean square deviation of atomic positions is the measure of the average distance between the atoms of superimposed proteins. In structure based drug design , the RMSD is a measure of the difference between a crystal conformation of the ligand conformation and a docking prediction.
The MSE either assesses the quality of a predictor (i.e., a function mapping arbitrary inputs to a sample of values of some random variable), or of an estimator (i.e., a mathematical function mapping a sample of data to an estimate of a parameter of the population from which the data is sampled).
The second moment of a random variable, () is also called the mean square. The square root of a mean square is known as the root mean square (RMS or rms), and can be used as an estimate of the standard deviation of a random variable when the random variable is zero-mean.
Physical scientists often use the term root mean square as a synonym for standard deviation when it can be assumed the input signal has zero mean, that is, referring to the square root of the mean squared deviation of a signal from a given baseline or fit. [8] [9] This is useful for electrical engineers in calculating the "AC only" RMS of a signal.
Some formulas in these fields are expressed using the squared coefficient of variation, often abbreviated SCV. In modeling, a variation of the CV is the CV(RMSD). Essentially the CV(RMSD) replaces the standard deviation term with the Root Mean Square Deviation (RMSD).
In statistical mechanics, the mean squared displacement (MSD, also mean square displacement, average squared displacement, or mean square fluctuation) is a measure of the deviation of the position of a particle with respect to a reference position over time.
The standard deviation is the square root of the variance. ... the reduced chi-squared statistic is called the outfit mean-square statistic, ...