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Analysis of similarities (ANOSIM) is a non-parametric statistical test widely used in the field of ecology. The test was first suggested by K. R. Clarke [1] as an ANOVA -like test, where instead of operating on raw data, operates on a ranked dissimilarity matrix. Given a matrix of rank dissimilarities between a set of samples, each belonging to ...
In mathematics, a Euclidean distance matrix is an n×n matrix representing the spacing of a set of n points in Euclidean space. For points in k -dimensional space ℝk, the elements of their Euclidean distance matrix A are given by squares of distances between them. That is. where denotes the Euclidean norm on ℝk.
Dice-Sørensen coefficient. A statistic used for comparing the similarity of two samples. The Dice-Sørensen coefficient (see below for other names) is a statistic used to gauge the similarity of two samples. It was independently developed by the botanists Lee Raymond Dice [1] and Thorvald Sørensen, [2] who published in 1945 and 1948 respectively.
Similarity measure. In statistics and related fields, a similarity measure or similarity function or similarity metric is a real-valued function that quantifies the similarity between two objects. Although no single definition of a similarity exists, usually such measures are in some sense the inverse of distance metrics: they take on large ...
The index of dissimilarity is a demographic measure of the evenness with which two groups are distributed across component geographic areas that make up a larger area. A group is evenly distributed when each geographic unit has the same percentage of group members as the total population. The index score can also be interpreted as the ...
The simple matching coefficient (SMC) or Rand similarity coefficient is a statistic used for comparing the similarity and diversity of sample sets. [1][better source needed] Given two objects, A and B, each with n binary attributes, SMC is defined as: where. is the total number of attributes where A has value 1 and B has value 0. The simple ...
In data analysis, the self-similarity matrix is a graphical representation of similar sequences in a data series. Similarity can be explained by different measures, like spatial distance (distance matrix), correlation, or comparison of local histograms or spectral properties (e.g. IXEGRAM [1]). A similarity plot can be the starting point for ...
Diversity index. A diversity index is a method of measuring how many different types (e.g. species) there are in a dataset (e.g. a community). Some more sophisticated indices also account for the phylogenetic relatedness among the types. [1]