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3D Slicer Extensible, free open source multi-purpose software for visualization and analysis. Amira 3D visualization and analysis software; Analysis of Functional NeuroImages (AFNI) Analyze developed by the Biomedical Imaging Resource (BIR) at Mayo Clinic. Brain Image Analysis Package; CamBA; Caret Van Essen Lab, Washington University in St. Louis
Analysis of Functional NeuroImages (AFNI) is an open-source environment for processing and displaying functional MRI data—a technique for mapping human brain activity.. AFNI is an agglomeration of programs that can be used interactively or flexibly assembled for batch processing using shell script.
Free registration and binary installation are available without a cost, but a license key (text file) is necessary to run the FreeSurfer binaries. [20] Documentation can be found on the FreeSurfer Wiki [ 21 ] and limited support is available from the developers and community through the FreeSurfer mailing list.
A number of online neuroscience databases are available which provide information regarding gene expression, neurons, macroscopic brain structure, and neurological or psychiatric disorders. Some databases contain descriptive and numerical data, some to brain function, others offer access to 'raw' imaging data, such as postmortem brain sections ...
There are a number of third-party maintained lists of open-source Android applications, including: Android Open Source resources and software database; F-Droid Repository of free and open-source Android software; PRISM Break – curated list of security focused open-source alternatives to mitigate some threats of PRISM, XKeyscore and Tempora.
The FMRIB Software Library, abbreviated FSL, is a software library containing image analysis and statistical tools for functional, structural and diffusion MRI brain imaging data. FSL is available as both precompiled binaries and source code for Apple and PC ( Linux ) computers.
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Galaxy is a web platform for data-intensive biology using geographically-distributed supercomputers. [56] LabKey Server is an extensible platform for integrating, analyzing and sharing all types of biomedical research data. It provides secure, web-based access to research data and includes a customizable data processing pipeline.