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KEGG (Kyoto Encyclopedia of Genes and Genomes) is a collection of databases dealing with genomes, biological pathways, diseases, drugs, and chemical substances.KEGG is utilized for bioinformatics research and education, including data analysis in genomics, metagenomics, metabolomics and other omics studies, modeling and simulation in systems biology, and translational research in drug development.
In addition to various primary data formats (e.g. GPML, BioPAX, Reactome, [10] KEGG, and RDF [11]), WikiPathways supports a variety of ways to integrate and interact with pathway content. These include directed link-outs, image maps, RSS feeds and deep web services. [12] This enables reuse in projects like COVID19 Disease Map. [13]
To begin a session on MetPA users must first have a list of significant compounds derived from a metabolomic tests or compounds and concentration data with information about the phenotype of the organisms under study. The list of compounds can include common names, HMDB IDs or KEGG IDs with one compound per row. Compound concentration tables ...
Each entry contains referenced information about the RNA, including sequences, structural information, genomic context, expression, subcellular localization, conservation, functional evidence and other relevant information. lncRNAdb can be searched by querying published RNA names and aliases, sequences, species and associated protein-coding ...
The KEGG pathway map of Rickettsia rickettsii is visualised by GLAMM with a metabolite highlighted. The Pathway Browser lets users to navigate the Kyoto Encyclopedia of Genes and Genomes (KEGG) [11] pathway maps displaying predicted presence or absence of enzymes for up to two selected genomes. The map of a particular pathway and a comparison ...
Pathway resources and types of pathway analysis using databases like KEGG, Reactome and WikiPathways. [1]Pathway is the term from molecular biology for a curated schematic representation of a well characterized segment of the molecular physiological machinery, such as a metabolic pathway describing an enzymatic process within a cell or tissue or a signaling pathway model representing a ...
KEGG: Kyoto Encyclopedia of Genes and Genomes Kyoto University Bioinformatics Center: Compounds Glycans (also enzymes, reactions, pathways) CAS ChEBI ChEMBL MASSBANK NIKKAJI PubChem PDB-CCD "KEGG". K i Database: PDSP ligand binding "Ki Database". KNApSAcK Nara Institute of Science and Technology: InChI CAS SMILES organisms C00 "KNApSAcK". LINCS
The Gene Ontology (GO) is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species. [1] More specifically, the project aims to: 1) maintain and develop its controlled vocabulary of gene and gene product attributes; 2) annotate genes and gene products, and assimilate and disseminate annotation data; and 3) provide tools for easy access ...