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  2. VSEPR theory - Wikipedia

    en.wikipedia.org/wiki/VSEPR_theory

    Valence shell electron pair repulsion (VSEPR) theory (/ ˈ v ɛ s p ər, v ə ˈ s ɛ p ər / VESP-ər, [1]: 410 və-SEP-ər [2]) is a model used in chemistry to predict the geometry of individual molecules from the number of electron pairs surrounding their central atoms. [3]

  3. List of protein structure prediction software - Wikipedia

    en.wikipedia.org/wiki/List_of_protein_structure...

    Constituent amino-acids can be analyzed to predict secondary, tertiary and quaternary protein structure. This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading, ab initio methods, secondary structure prediction, and transmembrane helix and signal peptide prediction.

  4. List of software for nanostructures modeling - Wikipedia

    en.wikipedia.org/wiki/List_of_software_for...

    NEMO 3-D [10] – enables multi-million atom electronic structure simulations in empirical tight binding; open source; an educational version is on nanoHUB and Quantum Dot Lab [11] nextnano [12] allows simulating geometry, electronic properties and electrical transport phenomena in various nanostructures using continuum models (commercial software)

  5. List of protein secondary structure prediction programs

    en.wikipedia.org/wiki/List_of_protein_secondary...

    predict both 3-state and 8-state secondary structure using conditional neural fields from PSI-BLAST profiles: Webserver/downloadable: server download: 2011 GOR: Information theory/Bayesian inference: Many implementations: Basic GOR GOR V: 2002 (GOR V) Jpred: Multiple Neural network assignment from PSI-BLAST and HMMER profiles. Predicts ...

  6. Comparison of software for molecular mechanics modeling

    en.wikipedia.org/wiki/Comparison_of_software_for...

    Runs on NVIDIA GPUs and 64-bit Linux, has heavily optimized CUDA code. Proprietary, trial licenses available PetaChem LLC: TINKER: I Yes Yes Yes Yes I I Yes Yes Software tools for molecular design-Tinker-OpenMM [6] Software tools for molecular design-Tinker-HP [7] Proprietary, gratis Washington University: UCSF Chimera: Yes Yes Yes No No No No ...

  7. Iodine heptafluoride - Wikipedia

    en.wikipedia.org/wiki/Iodine_heptafluoride

    Iodine heptafluoride is an interhalogen compound with the chemical formula I F 7. [2] [3] It has an unusual pentagonal bipyramidal structure, with D 5h symmetry, as predicted by VSEPR theory. [4]

  8. Gaussian (software) - Wikipedia

    en.wikipedia.org/wiki/Gaussian_(software)

    The name originates from Pople's use of Gaussian orbitals to speed up molecular electronic structure calculations as opposed to using Slater-type orbitals, a choice made to improve performance on the limited computing capacities of then-current computer hardware for Hartree–Fock calculations. The current version of the program is Gaussian 16. [5]

  9. Iodine trifluoride - Wikipedia

    en.wikipedia.org/wiki/Iodine_trifluoride

    Structure [ edit ] The iodine atom of iodine trifluoride has five electron pairs, of which two are lone-pairs, and the molecule is T-shaped as predicted by VSEPR Theory .

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