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Peptide bond formation via dehydration reaction. When two amino acids form a dipeptide through a peptide bond, [1] it is a type of condensation reaction. [2] In this kind of condensation, two amino acids approach each other, with the non-side chain (C1) carboxylic acid moiety of one coming near the non-side chain (N2) amino moiety of the other.
[1] [2] [3] The hydrogen bonding pattern in an alpha sheet is similar to that of a beta sheet, but the orientation of the carbonyl and amino groups in the peptide bond units is distinctive; in a single strand, all the carbonyl groups are oriented in the same direction on one side of the pleat, and all the amino groups are oriented in the same ...
In this modification, an asparagine or aspartate side chain attacks the following peptide bond, forming a symmetrical succinimide intermediate. Hydrolysis of the intermediate produces either aspartate or the β-amino acid, iso(Asp). For asparagine, either product results in the loss of the amide group, hence "deamidation". hydroxylation
The following other wikis use this file: Usage on de.wikipedia.org Peptidbindung; Usage on et.wikipedia.org Peptiidid; Usage on fi.wikipedia.org Peptidisidos
Chemical structure of the peptide bond (bottom) and the three-dimensional structure of a peptide bond between an alanine and an adjacent amino acid (top/inset). The bond itself is made of the CHON elements. Resonance structures of the peptide bond that links individual amino acids to form a protein polymer
Hydrogen bond: A hydrogen bond is a specific type of dipole-dipole interaction between a partially positive hydrogen atom and a partially negative electron donor that contain a pair of electrons such as oxygen, fluorine and nitrogen. The strength of hydrogen bond depends on the chemical nature and geometric arrangement of each group.
During this step, the actual cleavage of the peptide bond takes place (shown by the green arrow). In the following step, a water molecule (blue), the nucleophilicity of which is again enhanced by His 57 takes the amine's place. In the last step, serine leaves the tetrahedral intermediate and thereby the catalytic triad is regenerated.
Disulfide bonds Interlocked SS symbol or a zigzag, like a stylized lightning stroke. Prosthetic groups or inhibitors Stick figures, or ball & stick. Metals Spheres. Shading and colour Shading or colour adds dimensionality to the diagram. Generally, the features at the front are the highest in contrast and those towards the back are the lowest.