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Client-side Javascript SVG viewer for annotated rooted trees. Also supports phylogenetic networks. Iroki [5] Automatic customization and visualization of phylogenetic trees. iTOL - interactive Tree Of Life [6] annotate trees with various types of data and export to various graphical formats; scriptable through a batch interface. Microreact [7]
Clustal Omega, ClustalW2, MAFFT, MUSCLE, BioJava are integrated to construct alignment. Tree calculation tool calculates phylogenetic tree using BioJava API and lets user draw trees using Archaeopteryx. Software is package of 7 interactive visual tools for multiple sequence alignments. Major focus is manipulating large alignments.
WinDirStat is a free and open-source graphical disk usage analyzer for Microsoft Windows.It presents a sub-tree view with disk-use percentage alongside a usage-sorted list of file extensions that is interactively integrated with a colorful graphical display (a treemap).
JSON streaming comprises communications protocols to delimit JSON objects built upon lower-level stream-oriented protocols (such as TCP), that ensures individual JSON objects are recognized, when the server and clients use the same one (e.g. implicitly coded in). This is necessary as JSON is a non-concatenative protocol (the concatenation of ...
JSON (JavaScript Object Notation, pronounced / ˈdʒeɪsən / or / ˈdʒeɪˌsɒn /) is an open standard file format and data interchange format that uses human-readable text to store and transmit data objects consisting of attribute–value pairs and arrays (or other serializable values).
jCard, "The JSON Format for vCard" is a standard proposal of 2014 in RFC 7095.RFC 7095 describes a lossless method of representing vCard instances in JSON, using arrays of sequence-dependent tag–value pairs. jCard has been incorporated into several other protocols, including RDAP, the Protocol to Access White Space Databases (PAWS, described in RFC 7545), and SIP, which (via RFC 8688) uses ...
Python. PyCharm – Cross-platform Python IDE with code inspections available for analyzing code on-the-fly in the editor and bulk analysis of the whole project. PyDev – Eclipse-based Python IDE with code analysis available on-the-fly in the editor or at save time. Pylint – Static code analyzer.
Archaeopteryx is an interactive computer software program, written in Java, for viewing, editing, and analyzing phylogenetic trees. This type of program can be used for a variety of analyses of molecular data sets, but is particularly designed for phylogenomics. Besides tree description formats with limited expressiveness (such as Newick/New ...