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As of 2002, the number of classified green plant species was estimated to be around 370,000, however, there are probably many thousands more yet unclassified. [10] Despite this number, very few of these species have detailed DNA sequence information to date; 125,426 species in GenBank, as of 11 April 2012, [11] but most (>95%) having DNA sequence for only one or two genes. "...almost none of ...
In 2014, the second version of the website was launched. As of March 2015, the database listed 2.7 million accessions stored in 446 institutes from 252 countries. The source code, notably for the web server, is available online. [3]
The site is a resource for identifying taxonomic information (scientific names) as well as common names [3] on more than 500,000 accessions (distinct varieties, cultivars etc.) of plants covering 10,000 species; [4] [5] both economically important ones [3] and wild species.
The term transcriptome is a portmanteau of the words transcript and genome; it is associated with the process of transcript production during the biological process of transcription. The early stages of transcriptome annotations began with cDNA libraries published in the 1980s. Subsequently, the advent of high-throughput technology led to ...
Avibase – the World Bird Database [4] Birds, distribution, taxonomy X Avibase is an extensive database information system about all birds of the world, containing over 27 million records about 10,000 species and 22,000 subspecies of birds, including distribution information for 20,000 regions, taxonomy, synonyms in several languages and more
Model plant: 206.7 Mbp 32,670 [58] 8: 2011 [58] 8.3X sequence coverage, analyzed on ABI 3730XL capillary sequencers Arabidopsis thaliana Ecotype:Columbia: Brassicaceae: Model plant: 135 Mbp: 27,655 [59] 5 AGI 2000 [60] Barbarea vulgaris. G-type. Brassicaceae: Model plant for specialised metabolites and plant defenses 167.7 Mbp 25,350 8 2017 [61]
For example, a database of SNPs used in Douglas fir breeding programs was created by de novo transcriptome analysis in the absence of a sequenced genome. [159] Similarly, genes that function in the development of cardiac, muscle, and nervous tissue in lobsters were identified by comparing the transcriptomes of the various tissue types without ...
Pennsylvania Spatial Data Access (PASDA), [4] the official public geospatial data clearinghouse for the Commonwealth of Pennsylvania marked its 18th year in 2014. PASDA, which has grown from a small website offering 35 data sets in 1996 to the expansive user-centered data clearinghouse that it is today, has become a staple of the GIS community in Pennsylvania.