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Flexible and fast read mapping program (twice as fast as BWA), achieves a mapping sensitivity comparable to Stampy. Internally uses a memory efficient index structure (hash table) to store positions of all 13-mers present in the reference genome. Mapping regions where pairwise alignments are required are dynamically determined for each read.
GMAP A Genomic Mapping and Alignment Program for mRNA and EST Sequences. HISAT is a spliced alignment program for mapping RNA-seq reads. In addition to one global FM-index that represents a whole genome, HISAT uses a large set of small FM-indexes that collectively cover the whole genome (each index represents a genomic region of ~64,000 bp and ...
High performance GPU-accelerated ab initio molecular dynamics and TD/DFT software package for very large molecular or even nanoscale systems. Runs on NVIDIA GPUs and 64-bit Linux, has heavily optimized CUDA code. Proprietary, trial licenses available PetaChem LLC: TINKER: I Yes Yes Yes Yes I I Yes Yes Software tools for molecular design-Tinker ...
Chemical Computing Group is a software company specializing in research software for computational chemistry, bioinformatics, cheminformatics, docking, pharmacophore searching and molecular simulation. The company's main customer base consists of pharmaceutical and biotechnology companies, as well as academic research groups.
This is a list of free and open-source software for geological data handling and interpretation. The list is split into broad categories, depending on the intended use of the software and its scope of functionality. Notice that 'free and open-source' requires that the source code is available and users are given a free software license.
Generic Mapping Tools (GMT) are an open-source collection of computer software tools for processing and displaying xy and xyz datasets, including rasterization, filtering and other image processing operations, and various kinds of map projections. The software stores 2-D grids as COARDS-compliant netCDF files and comes with a comprehensive ...
Caliper Corporation was founded in 1983 as a developer of mapping software and is headquartered in ... the first Microsoft Windows version, was released on May 28 ...
Rig control companion program Flarq: Automatic Repeat reQuest companion program for Fldigi GNU Radio: GPL: Windows, macOS, Linux: software-defined radio and signal processing SDRangel: GPL: Windows, macOS, Linux: software-defined radio SDR# Freeware Windows software-defined radio receiver SDR++: GPL: Windows, macOS, Linux, Android: software ...