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One can find the lengths and starting positions of the longest common substrings of and in (+) time with the help of a generalized suffix tree.A faster algorithm can be achieved in the word RAM model of computation if the size of the input alphabet is in ( (+)).
Longest common subsequence problem over multiple sequences [3]: SR10 The bounded variant of the Post correspondence problem [3]: SR11 Shortest common supersequence over multiple sequences [3]: SR8 Extension of the string-to-string correction problem [11] [3]: SR8
A suffix tree of the letters ATCGATCGA$ In computer science, the longest repeated substring problem is the problem of finding the longest substring of a string that occurs at least twice.
ROUGE-L: Longest Common Subsequence (LCS) [3] based statistics. Longest common subsequence problem takes into account sentence-level structure similarity naturally and identifies longest co-occurring in sequence n-grams automatically. ROUGE-W: Weighted LCS-based statistics that favors consecutive LCSes.
This is a problem closely related to the longest common subsequence problem. Given two sequences X = < x 1,...,x m > and Y = < y 1,...,y n >, a sequence U = < u 1,...,u k > is a common supersequence of X and Y if items can be removed from U to produce X and Y. A shortest common supersequence (SCS) is a common supersequence of minimal length.
For a fixed length n, the Hamming distance is a metric on the set of the words of length n (also known as a Hamming space), as it fulfills the conditions of non-negativity, symmetry, the Hamming distance of two words is 0 if and only if the two words are identical, and it satisfies the triangle inequality as well: [2] Indeed, if we fix three words a, b and c, then whenever there is a ...
A longest common subsequence (LCS) is the longest subsequence common to all sequences in a set of sequences (often just two sequences). It differs from the longest common substring : unlike substrings, subsequences are not required to occupy consecutive positions within the original sequences.
This subsequence has length six; the input sequence has no seven-member increasing subsequences. The longest increasing subsequence in this example is not the only solution: for instance, 0, 4, 6, 9, 11, 15 0, 2, 6, 9, 13, 15 0, 4, 6, 9, 13, 15. are other increasing subsequences of equal length in the same input sequence.