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Linux, macOS, Windows: BSD: Laura Luebbert and Lior Pachter: GROMACS: Molecular dynamics package mainly designed for simulations of proteins, lipids and nucleic acids. Linux, macOS, Windows: Common Public 1.0 GenoViz Integrated Genome Browser: Java-based desktop genome browser: Linux, macOS, Windows: Common Public 1.0 GenoViz InterMine
RootsMagic was designed to run on the Windows and Mac platform, however some users run RootsMagic on Linux machines using Wine. [ 20 ] [ 21 ] As of RootsMagic 10, the program can be run on Windows 8, 10, and 11, as well as MacOS High Sierra (10.13) through Sonoma (14).
List of protein structure prediction software; Category:Molecular dynamics software; Structural alignment software; Other. Compression of genomic sequencing data; Bioinformatics workflow management system; List of genetic engineering software; List of systems biology visualization software; List of systems biology modelling software; 2D gel ...
[33] Tajima's Neutrality Test — The purpose of Tajima's Neutrality Test is to assess the relationship between the number of segregating sites per site and nucleotide diversity. When alleles are selectively neutral the product 4Nv can be estimated in two ways. N represents the effective population size and v is the mutation rate per site.
The vast majority of modern systems biology modeling software support SBML, which is the de facto standard for exchanging models of biological cellular processes. Some tools also support CellML , a standard used for representing physiological processes.
Mesquite is software for evolutionary biology, designed to help biologists analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern comparative analyses or population genetics, while others do non-phylogenetic multivariate analysis.
Name Description Site GESTALT Workbench graphical workbench for analysis of large-scale genomic sequence data N-Browse interactive graphical browser for biological networks
Bioconductor is a free, open source and open development software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology. Bioconductor is based primarily on the statistical R programming language , but does contain contributions in other programming languages.