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[33] Tajima's Neutrality Test — The purpose of Tajima's Neutrality Test is to assess the relationship between the number of segregating sites per site and nucleotide diversity. When alleles are selectively neutral the product 4Nv can be estimated in two ways. N represents the effective population size and v is the mutation rate per site.
Name Description Site GESTALT Workbench graphical workbench for analysis of large-scale genomic sequence data N-Browse interactive graphical browser for biological networks
Software tools used for visualizing biological data range from simple, standalone programs to complex, integrated systems. An emerging trend is the blurring of boundaries between the visualization of 3D structures at atomic resolution, the visualization of larger complexes by cryo-electron microscopy , and the visualization of the location of ...
The vast majority of modern systems biology modeling software support SBML, which is the de facto standard for exchanging models of biological cellular processes. Some tools also support CellML , a standard used for representing physiological processes.
Mesquite is software for evolutionary biology, designed to help biologists analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern comparative analyses or population genetics, while others do non-phylogenetic multivariate analysis.
Software platform, allows organizations to integrate, analyze, and share complex biomedical data Linux, macOS, Windows: Apache: LabKey Software Foundation LAMMPS: Molecular dynamics program written in C++: Linux, macOS, Windows: Apache: Sandia National Laboratories. mothur: Software for analysis of 16S rRNA gene amplicon sequence data Linux ...
Bioinformatics is a biweekly peer-reviewed open-access scientific journal covering research and software in bioinformatics and computational biology.It is the official journal of the International Society for Computational Biology (ISCB), together with PLOS Computational Biology.
Systems Biology Pathway Exchange (SBPAX) is an extension for Level 3 and proposal for Level 4 to add quantitative data and systems biology terms (such as Systems Biology Ontology). SBPAX export has been implemented by the pathway databases Signaling Gateway Molecule Pages , [ 1 ] and the SABIO-Reaction Kinetics Database .