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  2. List of open-source bioinformatics software - Wikipedia

    en.wikipedia.org/wiki/List_of_open-source...

    Software platform, allows organizations to integrate, analyze, and share complex biomedical data Linux, macOS, Windows: Apache: LabKey Software Foundation LAMMPS: Molecular dynamics program written in C++: Linux, macOS, Windows: Apache: Sandia National Laboratories. mothur: Software for analysis of 16S rRNA gene amplicon sequence data Linux ...

  3. Virtual Cell - Wikipedia

    en.wikipedia.org/wiki/Virtual_Cell

    The results can be displayed on-line, or they can be downloaded to the user's computer in a wide variety of export formats. The Virtual Cell license allows free access to all members of the scientific community. [6] Users may save their models in the VCell DataBase, which is maintained on servers at U. Connecticut.

  4. List of systems biology modeling software - Wikipedia

    en.wikipedia.org/wiki/List_of_systems_biology...

    The vast majority of modern systems biology modeling software support SBML, which is the de facto standard for exchanging models of biological cellular processes. Some tools also support CellML , a standard used for representing physiological processes.

  5. List of phylogenetics software - Wikipedia

    en.wikipedia.org/wiki/List_of_phylogenetics_software

    Mesquite is software for evolutionary biology, designed to help biologists analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern comparative analyses or population genetics, while others do non-phylogenetic multivariate analysis.

  6. List of systems biology visualization software - Wikipedia

    en.wikipedia.org/wiki/List_of_systems_biology...

    free, online, open-source, phylogenetic analysis, drawing dendrograms etc. REACTOME free, online, open-source, curated pathway database encompassing many areas of human biology WikiPathways: curate biological pathways MetaboMAPS: visualize omics data on shared metabolic pathways [1]

  7. Molecular Evolutionary Genetics Analysis - Wikipedia

    en.wikipedia.org/wiki/Molecular_Evolutionary...

    [33] Tajima's Neutrality Test — The purpose of Tajima's Neutrality Test is to assess the relationship between the number of segregating sites per site and nucleotide diversity. When alleles are selectively neutral the product 4Nv can be estimated in two ways. N represents the effective population size and v is the mutation rate per site.

  8. List of genetic engineering software - Wikipedia

    en.wikipedia.org/wiki/List_of_genetic...

    Agilent Technologies RFLP Decoder Software, Fish Species; Applied Biosystems GeneMapper; Joint BioEnergy Institute j5; CLC bio CLC DNA Workbench Software; CLC bio CLC Free Workbench Software; CLC bio CLC Sequence Viewer; CLC bio Protein Workbench Software; DNASTAR Lasergene; Geneious; LabVantage Solutions Inc. LabVantage Sapphire; LabVantage ...

  9. List of phylogenetic tree visualization software - Wikipedia

    en.wikipedia.org/wiki/List_of_phylogenetic_tree...

    Software for viewing trees, cladograms, NeighborNets, and other graphs All [30] TreeDyn Open-source software for tree manipulation and annotation allowing incorporation of meta information: All [31] Treevolution Open-source tool for circular visualization with section and ring distortion and several other features such as branch clustering and ...