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Dice-Sørensen coefficient. A statistic used for comparing the similarity of two samples. The Dice-Sørensen coefficient (see below for other names) is a statistic used to gauge the similarity of two samples. It was independently developed by the botanists Lee Raymond Dice [1] and Thorvald Sørensen, [2] who published in 1945 and 1948 respectively.
In mathematics, a Euclidean distance matrix is an n×n matrix representing the spacing of a set of n points in Euclidean space. For points in k -dimensional space ℝk, the elements of their Euclidean distance matrix A are given by squares of distances between them. That is. where denotes the Euclidean norm on ℝk.
Jaccard distance is commonly used to calculate an n × n matrix for clustering and multidimensional scaling of n sample sets. This distance is a metric on the collection of all finite sets. [8] [9] [10] There is also a version of the Jaccard distance for measures, including probability measures.
Distance matrix. In mathematics, computer science and especially graph theory, a distance matrix is a square matrix (two-dimensional array) containing the distances, taken pairwise, between the elements of a set. [1] Depending upon the application involved, the distance being used to define this matrix may or may not be a metric. If there are N ...
Metric multidimensional scaling (mMDS) It is a superset of classical MDS that generalizes the optimization procedure to a variety of loss functions and input matrices of known distances with weights and so on. A useful loss function in this context is called stress, which is often minimized using a procedure called stress majorization.
The index of dissimilarity is a demographic measure of the evenness with which two groups are distributed across component geographic areas that make up a larger area. A group is evenly distributed when each geographic unit has the same percentage of group members as the total population. The index score can also be interpreted as the ...
Similarity measure. In statistics and related fields, a similarity measure or similarity function or similarity metric is a real-valued function that quantifies the similarity between two objects. Although no single definition of a similarity exists, usually such measures are in some sense the inverse of distance metrics: they take on large ...
UniFrac, a shortened version of unique fraction metric, is a distance metric used for comparing biological communities.It differs from dissimilarity measures such as Bray-Curtis dissimilarity in that it incorporates information on the relative relatedness of community members by incorporating phylogenetic distances between observed organisms in the computation.