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DNA annotation or genome annotation is the process of identifying the locations of genes and all of the coding regions in a genome and determining what those genes do. An annotation (irrespective of the context) is a note added by way of explanation or commentary. Once a genome is sequenced, it needs to be annotated to make sense of it. [49]
Text annotations can serve a variety of functions for both private and public reading and communication practices. In their article "From the Margins to the Center: The Future of Annotation," scholars Joanna Wolfe and Christine Neuwirth identify four primary functions that text annotations commonly serve in the modern era, including: (1)"facilitat[ing] reading and later writing tasks," which ...
The annotations can be thought of as a layer on top of the existing resource, and this annotation layer is usually visible to other users who share the same annotation system. In such cases, the web annotation tool is a type of social software tool. For Web-based text annotation systems, see Text annotation.
A notable example of deep semantic annotation is the Groningen Meaning Bank, developed at the University of Groningen and annotated using Discourse Representation Theory. An example of a shallow semantic treebank is PropBank , which provides annotation of verbal propositions and their arguments, without attempting to represent every word in the ...
Annotations are often used by frameworks as a way of conveniently applying behaviours to user-defined classes and methods that must otherwise be declared in an external source (such as an XML configuration file) or programmatically (with API calls). The following, for example, is an annotated JPA data class:
Another example is indicating the lemma (base) form of each word. When the language of the corpus is not a working language of the researchers who use it, interlinear glossing is used to make the annotation bilingual. Some corpora have further structured levels of analysis applied. In particular, smaller corpora may be fully parsed.
An illustration of Java source code with prologue comments indicated in red and inline comments in green. Program code is in blue.. In computer programming, a comment is a human-readable explanation or annotation in the source code of a computer program.
A gloss is a notation regarding the main text in a document. Shown is a parchment page from the Royal Library of Copenhagen. A gloss is a brief notation, especially a marginal or interlinear one, of the meaning of a word or wording in a text.