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Triple-stranded DNA (also known as H-DNA or Triplex-DNA) is a DNA structure in which three oligonucleotides wind around each other and form a triple helix. In triple-stranded DNA, the third strand binds to a B-form DNA (via Watson–Crick base-pairing) double helix by forming Hoogsteen base pairs or reversed Hoogsteen hydrogen bonds.
Three DNA conformations are believed to be found in nature, A-DNA, B-DNA, and Z-DNA. The "B" form described by James D. Watson and Francis Crick is believed to predominate in cells. [ 2 ] James D. Watson and Francis Crick described this structure as a double helix with a radius of 10 Å and pitch of 34 Å , making one complete turn about its ...
The tertiary arrangement of DNA's double helix in space includes B-DNA, A-DNA, and Z-DNA. Triple-stranded DNA structures have been demonstrated in repetitive polypurine:polypyrimidine Microsatellite sequences and Satellite DNA. B-DNA is the most common form of DNA in vivo and is a more narrow, elongated helix than A-DNA. Its wide major groove ...
However, branched DNA can occur if a third strand of DNA is introduced and contains adjoining regions able to hybridize with the frayed regions of the pre-existing double-strand. Although the simplest example of branched DNA involves only three strands of DNA, complexes involving additional strands and multiple branches are also possible. [ 69 ]
In 1999 it was reported that telomeres, which cap the end of chromosomes, terminate in a lariat-like structure termed a T-loop (Telomere-loop). [11] This is a loop of both strands of the chromosome which are joined to an earlier point in the double-stranded DNA by the 3' strand end invading the strand pair to form a D-loop.
The bases are the part of the molecule closest to the triple helix's axis, and the backbone is the part of the molecule farthest away from the axis. The third strand occupies the major groove of relatively normal duplex DNA. [7] The bases in triplex DNA are arranged to match up according to a Hoogsteen base pairing scheme. [8]
Triplexes are three-stranded DNA structures formed by the binding of a third strand to a DNA duplex. [5] Triplexes can be formed by pyrimidine-rich or purine-rich third strands, and they can occur in genomic regions with inverted repeats, mirror repeats, or other special sequences. Triplexes can affect DNA replication, transcription, and ...
Base triads in a DNA triple helix structure. This non-Watson–Crick base-pairing allows the third strands to wind around the duplexes, which are assembled in the Watson–Crick pattern, and form triple-stranded helices such as (poly(dA)•2poly(dT)) and (poly(rG)•2poly(rC)). [5]