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Data structure alignment is the way data is arranged and accessed in computer memory. It consists of three separate but related issues: data alignment , data structure padding , and packing . The CPU in modern computer hardware performs reads and writes to memory most efficiently when the data is naturally aligned , which generally means that ...
A data structure known as a hash table.. In computer science, a data structure is a data organization and storage format that is usually chosen for efficient access to data. [1] [2] [3] More precisely, a data structure is a collection of data values, the relationships among them, and the functions or operations that can be applied to the data, [4] i.e., it is an algebraic structure about data.
The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings of nucleic acid sequences or protein sequences. Instead of looking at the entire sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure.
Sequence alignment. In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences. [1] Aligned sequences of nucleotide or amino acid residues are typically represented ...
The SAM format consists of a header and an alignment section. [1] The binary equivalent of a SAM file is a Binary Alignment Map (BAM) file, which stores the same data in a compressed binary representation. [4] SAM files can be analysed and edited with the software SAMtools. [1] The header section must be prior to the alignment section if it is ...
The recent successes of large language models (LLMs), in particular their effectiveness at producing syntactically meaningful embeddings, has spurred the use of LLMs in the task of entity alignment. [31] As the amount of data stored in knowledge graphs grows, developing dependable methods for knowledge graph entity alignment becomes an ...
Hirschberg's algorithm. In computer science, Hirschberg's algorithm, named after its inventor, Dan Hirschberg, is a dynamic programming algorithm that finds the optimal sequence alignment between two strings. Optimality is measured with the Levenshtein distance, defined to be the sum of the costs of insertions, replacements, deletions, and null ...
Multiset (bag) Stack. Queue (example Priority queue) Double-ended queue. Graph (example Tree, Heap) Some properties of abstract data types: This article needs attention from an expert in Computer science. The specific problem is: further features needed. WikiProject Computer science may be able to help recruit an expert.